Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 0.0e+00 1763.0 931 100.0
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.4e-215 752.7 1109 47.3
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.3e-49 202.6 506 32.6
Pp3c14_25220 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.7e-34 151.8 425 31.8
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.8e-31 141.7 735 24.9
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.9e-27 129.0 709 25.0
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 1.5e-13 82.8 488 24.2
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 9.9e-13 80.1 95 51.6
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.2e-12 79.0 121 43.0
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.9e-12 78.6 95 49.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.8e-12 78.2 117 45.3
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 6.4e-12 77.4 92 48.9
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.1e-11 76.6 92 46.7
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.2e-11 75.1 92 45.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 3.2e-11 75.1 92 44.6
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.2e-11 75.1 92 48.9
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.2e-11 74.7 95 49.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 4.2e-11 74.7 92 45.7
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 5.4e-11 74.3 92 47.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.4e-11 74.3 176 33.5
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 7.1e-11 73.9 92 46.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 7.1e-11 73.9 92 46.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 7.1e-11 73.9 92 46.7
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 7.1e-11 73.9 92 43.5
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 7.1e-11 73.9 92 48.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 9.3e-11 73.6 90 51.1
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 9.3e-11 73.6 148 37.8
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.6e-10 72.8 92 44.6
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.1e-10 72.4 92 44.6
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.1e-10 72.4 92 44.6
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.1e-10 72.4 117 37.6
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 2.1e-10 72.4 92 45.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.7e-10 72.0 92 47.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.7e-10 72.0 93 46.2
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.5e-10 71.6 95 47.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 3.5e-10 71.6 92 47.8
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.5e-10 71.6 103 43.7
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 3.5e-10 71.6 94 46.8
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.6e-10 71.2 92 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1815 Anthoceros agrestis HOM05D022188 ORTHO05D006797 6.0e-10 70.9 662 24.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.0e-10 70.9 96 46.9
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 7.8e-10 70.5 94 46.8
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.3e-09 69.7 92 48.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.3e-09 69.7 95 44.2
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.7e-09 69.3 99 41.4
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.7e-09 69.3 139 38.1
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.3e-09 68.9 129 41.9
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.3e-09 68.9 92 42.4
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.3e-09 68.9 90 45.6
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.3e-09 68.9 114 43.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.3e-09 68.9 93 44.1
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.3e-09 68.9 95 46.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 3.0e-09 68.6 92 45.7
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.0e-09 68.6 106 44.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 5.1e-09 67.8 92 44.6
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 6.6e-09 67.4 94 44.7
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 6.6e-09 67.4 90 45.6
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.6e-09 67.4 92 43.5
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 6.6e-09 67.4 92 43.5
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 8.7e-09 67.0 141 35.5
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 8.7e-09 67.0 95 41.1
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 8.7e-09 67.0 96 45.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.5e-08 66.2 92 42.4
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.5e-08 66.2 101 42.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.9e-08 65.9 128 39.1
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.9e-08 65.9 92 46.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.9e-08 65.9 92 43.5
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 2.5e-08 65.5 77 51.9
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.5e-08 65.5 91 48.4
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 3.3e-08 65.1 141 35.5
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 4.3e-08 64.7 90 42.2
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 5.6e-08 64.3 92 41.3
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.6e-08 64.3 92 47.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 7.3e-08 63.9 142 33.8
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 7.3e-08 63.9 117 34.2
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 9.6e-08 63.5 90 42.2
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.3e-07 63.2 112 38.4
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.3e-07 63.2 94 41.5
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.3e-07 63.2 94 41.5
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 1.6e-07 62.8 90 46.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.6e-07 62.8 92 44.6
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.6e-07 62.8 91 41.8
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 2.1e-07 62.4 113 41.6
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.1e-07 62.4 92 43.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 3.6e-07 61.6 111 40.5
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 8.1e-07 60.5 94 44.7
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 8.1e-07 60.5 91 39.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.1e-07 60.5 114 39.5
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.1e-06 60.1 94 46.8
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.8e-06 59.3 93 41.9
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 2.4e-06 58.9 95 40.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.1e-06 58.5 102 39.2
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.1e-06 58.5 102 39.2
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.0e-06 58.2 117 39.3
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.3e-06 57.8 102 38.2
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.9e-06 57.4 78 44.9
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 9.0e-06 57.0 90 44.4
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 9.0e-06 57.0 126 37.3


User provided reference genes

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