Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.2e-129 465.7 250 100.0
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.9e-116 421.4 250 89.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.4e-101 371.7 226 84.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 9.5e-96 354.0 238 76.1
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.6e-95 353.2 263 71.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.6e-95 352.1 263 71.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 6.2e-95 351.3 263 69.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.2e-95 351.3 263 70.7
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 8.1e-95 350.9 263 69.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.1e-94 350.5 261 70.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-94 350.5 263 71.5
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.4e-94 350.1 262 71.4
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.4e-94 350.1 236 76.3
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.4e-94 350.1 236 75.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.4e-94 350.1 263 69.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.4e-94 350.1 263 69.6
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-94 350.1 263 69.6
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-94 349.4 263 69.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-94 349.4 263 69.6
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.3e-94 349.4 263 69.6
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 3.1e-94 349.0 263 70.0
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.0e-94 348.6 263 70.3
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-94 348.6 229 77.7
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.2e-94 348.2 263 69.6
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 5.2e-94 348.2 263 69.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.2e-94 348.2 263 69.6
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.8e-94 347.8 263 70.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 6.8e-94 347.8 263 68.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 8.9e-94 347.4 238 75.6
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 8.9e-94 347.4 263 68.8
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 8.9e-94 347.4 262 69.5
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-93 347.1 238 75.2
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.5e-93 346.7 263 69.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.5e-93 346.7 263 68.4
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.5e-93 346.7 263 69.2
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.5e-93 346.7 263 68.8
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.5e-93 346.7 263 68.8
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.0e-93 346.3 263 68.8
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.6e-93 345.9 238 75.6
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.6e-93 345.9 238 73.9
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.4e-93 345.5 262 70.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.4e-93 345.1 262 68.3
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.8e-93 344.7 263 68.8
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 7.6e-93 344.4 263 70.3
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 9.9e-93 344.0 238 74.8
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 9.9e-93 344.0 263 69.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 9.9e-93 344.0 263 68.1
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.3e-92 343.6 229 76.9
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.7e-92 343.2 238 73.9
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.7e-92 343.2 263 68.1
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.2e-92 342.8 219 78.1
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.2e-92 342.8 263 69.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.2e-92 342.8 236 75.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.2e-92 342.8 263 68.8
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.8e-92 342.0 229 75.5
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.9e-92 341.7 236 73.7
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 4.9e-92 341.7 250 72.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 8.4e-92 340.9 263 68.8
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 8.4e-92 340.9 220 79.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 8.4e-92 340.9 229 75.1
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 8.4e-92 340.9 229 75.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 8.4e-92 340.9 261 69.3
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 8.4e-92 340.9 261 69.3
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 8.4e-92 340.9 250 72.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.4e-91 340.1 255 69.8
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.9e-91 339.7 262 68.7
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.9e-91 339.7 228 75.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.4e-91 339.3 262 69.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 3.2e-91 339.0 255 69.8
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 3.2e-91 339.0 264 67.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 4.1e-91 338.6 250 71.2
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 5.4e-91 338.2 250 70.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 5.4e-91 338.2 260 68.1
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 5.4e-91 338.2 238 73.1
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 7.1e-91 337.8 238 73.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.1e-91 337.8 263 68.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 7.1e-91 337.8 238 71.8
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.2e-91 337.4 263 67.7
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.2e-90 337.0 262 68.7
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.2e-90 337.0 263 66.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 2.1e-90 336.3 238 72.3
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.7e-90 335.9 258 68.2
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 2.7e-90 335.9 263 66.5
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.7e-90 335.9 261 68.2
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 3.5e-90 335.5 236 72.9
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.5e-90 335.5 238 73.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.5e-90 335.5 263 66.9
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.5e-90 335.5 238 73.1
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.5e-90 335.5 263 66.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 4.6e-90 335.1 259 67.6
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 6.0e-90 334.7 262 68.3
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 6.0e-90 334.7 238 72.7
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.3e-89 333.6 263 67.3
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.3e-89 333.6 259 68.0
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.3e-89 333.6 264 68.2
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.3e-89 333.6 263 66.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.7e-89 333.2 229 74.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.0e-89 332.4 262 66.8
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 3.0e-89 332.4 263 66.5
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 3.9e-89 332.0 238 71.8
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.9e-89 332.0 238 72.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 3.9e-89 332.0 209 81.8
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 6.6e-89 331.3 260 67.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.6e-89 331.3 264 65.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-88 330.1 263 66.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.3e-88 328.9 250 68.0
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.6e-88 328.2 243 70.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.6e-88 328.2 238 71.8
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.6e-88 327.4 263 66.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 9.6e-88 327.4 262 66.0
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 9.6e-88 327.4 260 66.2
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.6e-87 325.5 238 70.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.6e-87 325.5 246 69.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.7e-87 325.1 218 76.1
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 6.2e-87 324.7 238 70.2
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.2e-87 324.7 246 69.5
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 8.1e-87 324.3 238 70.2
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-86 323.9 238 70.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.8e-86 323.2 238 69.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 8.9e-86 320.9 238 69.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.2e-85 320.5 263 64.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 5.8e-85 318.2 238 68.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.8e-85 318.2 256 66.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.4e-83 313.5 270 61.9
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.2e-82 310.5 245 66.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.7e-82 309.3 243 66.3
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 6.6e-81 304.7 224 70.5
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.3e-80 302.4 230 66.5
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.1e-79 299.7 213 72.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 4.8e-79 298.5 228 66.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.9e-76 289.3 249 60.6
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.8e-76 288.9 238 65.1
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.4e-75 287.0 263 62.4
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 6.2e-71 271.6 268 56.0
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.2e-68 263.1 233 61.4
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 5.5e-67 258.5 216 64.8
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.9e-65 252.3 233 57.5
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.1e-65 251.9 238 58.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.0e-62 242.3 238 58.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.0e-60 237.7 236 56.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 3.2e-59 232.6 201 62.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.8e-55 219.5 238 52.9
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.8e-55 218.8 223 56.1
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 4.1e-54 215.7 242 51.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.8e-52 209.1 227 56.4
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.5e-52 208.4 237 50.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.5e-48 197.2 131 74.8
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-45 187.6 221 53.4
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.6e-42 176.0 121 73.6
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.8e-38 163.7 180 52.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 3.8e-36 156.0 112 72.3
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 9.1e-30 134.8 128 59.4
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.5e-29 132.9 118 62.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.7e-21 106.7 180 39.4
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.1e-19 101.3 69 72.5
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.3e-15 85.5 59 69.5


User provided reference genes

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