Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 2.2e-227 792.0 406 100.0
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 5.8e-143 511.5 396 70.5
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 3.8e-70 269.6 354 46.9
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 6.4e-49 199.1 361 36.8
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 2.7e-47 193.7 343 37.6
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 6.0e-47 192.6 318 36.2
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 7.8e-47 192.2 341 37.0
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 2.3e-46 190.7 328 35.4
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 2.3e-46 190.7 314 36.9
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 2.3e-46 190.7 320 35.9
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 2.3e-46 190.7 320 35.9
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 3.9e-46 189.9 300 37.3
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 6.6e-46 189.1 319 36.1
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 6.6e-46 189.1 307 36.8
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 6.6e-46 189.1 307 36.8
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 8.6e-46 188.7 331 36.3
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 1.1e-45 188.3 317 36.0
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 1.9e-45 187.6 301 36.2
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 3.3e-45 186.8 328 34.5
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 4.3e-45 186.4 298 36.6
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 4.3e-45 186.4 318 36.5
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 5.6e-45 186.0 304 35.5
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 7.3e-45 185.7 312 36.5
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 7.3e-45 185.7 358 34.4
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 7.3e-45 185.7 311 36.7
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.2e-44 184.9 306 35.9
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 4.7e-44 183.0 313 35.8
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 8.1e-44 182.2 325 35.1
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 8.1e-44 182.2 304 36.5
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 8.1e-44 182.2 306 36.6
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.4e-43 181.4 361 34.9
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 2.3e-43 180.6 309 34.6
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 3.1e-43 180.3 313 35.5
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 3.1e-43 180.3 351 34.2
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 3.1e-43 180.3 329 35.6
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 4.0e-43 179.9 313 35.5
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 6.8e-43 179.1 344 33.7
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 8.9e-43 178.7 303 35.6
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 8.9e-43 178.7 318 35.2
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.2e-42 178.3 314 35.4
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 1.5e-42 177.9 306 34.6
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 1.5e-42 177.9 306 34.6
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 1.5e-42 177.9 317 34.7
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 1.5e-42 177.9 309 36.9
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 1.5e-42 177.9 309 36.9
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 2.0e-42 177.6 338 34.0
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 2.0e-42 177.6 331 34.4
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 2.0e-42 177.6 304 35.2
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 3.4e-42 176.8 304 36.2
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 4.4e-42 176.4 312 34.3
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 4.4e-42 176.4 306 34.0
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 4.4e-42 176.4 317 34.4
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 5.8e-42 176.0 310 36.8
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 7.5e-42 175.6 321 35.2
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 7.5e-42 175.6 315 34.3
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 7.5e-42 175.6 318 36.5
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 7.5e-42 175.6 305 33.1
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 9.9e-42 175.3 301 35.2
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 9.9e-42 175.3 305 37.0
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 1.3e-41 174.9 306 34.0
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 2.2e-41 174.1 317 34.7
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 2.2e-41 174.1 322 35.1
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 2.9e-41 173.7 301 35.2
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 2.9e-41 173.7 295 36.6
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 4.9e-41 172.9 287 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 6.4e-41 172.6 372 36.3
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 6.4e-41 172.6 318 34.0
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 8.3e-41 172.2 317 34.1
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 1.4e-40 171.4 327 33.9
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 2.4e-40 170.6 239 39.7
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 3.2e-40 170.2 292 36.0
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 3.2e-40 170.2 306 33.7
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 3.2e-40 170.2 269 38.7
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 4.1e-40 169.9 305 34.8
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 5.4e-40 169.5 343 32.4
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 2.7e-39 167.2 314 34.4
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 2.7e-39 167.2 304 34.5
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 2.7e-39 167.2 304 35.2
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 3.5e-39 166.8 291 33.7
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 6.0e-39 166.0 268 36.2
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.3e-38 164.9 331 35.6
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 2.3e-38 164.1 278 35.6
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 3.0e-38 163.7 346 32.7
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 6.6e-38 162.5 320 33.8
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 1.9e-37 161.0 306 32.0
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 2.5e-37 160.6 322 33.2
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 1.6e-36 157.9 277 34.7
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 2.1e-36 157.5 276 33.7
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 2.8e-36 157.1 324 32.4
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 8.1e-36 155.6 262 36.3
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 1.4e-35 154.8 299 34.4
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 1.8e-35 154.5 313 31.3
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 2.4e-35 154.1 260 35.4
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 3.1e-35 153.7 296 34.5
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 8.9e-35 152.1 317 32.2
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 9.9e-34 148.7 303 34.0
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 1.9e-32 144.4 343 30.6
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 3.2e-32 143.7 305 31.1
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 5.4e-32 142.9 345 30.7
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 4.6e-31 139.8 343 30.0
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 6.0e-31 139.4 301 32.6
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 2.3e-30 137.5 267 31.8
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 3.0e-30 137.1 177 44.1
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 7.3e-29 132.5 313 30.7
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 4.0e-27 126.7 195 34.9
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 2.6e-26 124.0 343 28.3
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 9.3e-24 115.5 169 39.6
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 5.1e-22 109.8 318 27.7
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 7.9e-15 85.9 114 37.7
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 6.7e-14 82.8 150 36.0
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 6.2e-12 76.3 136 32.4
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 5.3e-11 73.2 215 28.8


User provided reference genes

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