Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 2.6e-164 582.0 297 100.0
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 1.5e-76 290.4 224 64.3
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 5.8e-76 288.5 230 63.0
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 5.8e-76 288.5 225 63.6
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 7.6e-76 288.1 221 63.8
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 7.6e-76 288.1 221 63.8
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 2.2e-75 286.6 227 63.4
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 2.9e-75 286.2 203 67.0
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 2.9e-75 286.2 203 67.0
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 2.9e-75 286.2 215 64.7
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 3.8e-75 285.8 239 60.7
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 6.5e-75 285.0 216 65.3
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 6.5e-75 285.0 299 55.2
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 1.4e-74 283.9 230 61.7
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 1.4e-74 283.9 224 62.1
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 1.9e-74 283.5 232 61.2
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 2.5e-74 283.1 222 62.2
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 3.2e-74 282.7 229 61.6
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 3.2e-74 282.7 242 59.5
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 3.2e-74 282.7 226 61.5
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 3.2e-74 282.7 229 62.0
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 3.2e-74 282.7 207 64.3
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 4.2e-74 282.3 238 60.9
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 5.5e-74 282.0 232 60.8
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 7.1e-74 281.6 239 58.6
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 7.1e-74 281.6 211 64.9
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 7.1e-74 281.6 240 58.8
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 7.1e-74 281.6 248 58.1
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 9.3e-74 281.2 236 61.4
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 1.2e-73 280.8 219 63.5
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 1.2e-73 280.8 239 58.6
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 1.6e-73 280.4 236 61.0
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 1.6e-73 280.4 274 55.5
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 2.1e-73 280.0 216 62.5
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 2.7e-73 279.6 217 63.6
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 3.5e-73 279.3 239 58.2
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 4.6e-73 278.9 228 61.8
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 4.6e-73 278.9 232 58.2
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 6.0e-73 278.5 243 58.8
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 6.0e-73 278.5 240 58.3
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 7.9e-73 278.1 208 63.0
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 7.9e-73 278.1 235 58.7
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 1.0e-72 277.7 211 64.0
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 1.0e-72 277.7 255 56.5
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 1.3e-72 277.3 240 57.9
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 1.3e-72 277.3 235 60.0
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 1.3e-72 277.3 236 59.7
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 1.3e-72 277.3 250 56.4
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 1.8e-72 276.9 264 56.4
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 1.8e-72 276.9 236 60.6
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 2.3e-72 276.6 206 64.6
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 3.0e-72 276.2 220 60.0
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 3.9e-72 275.8 203 64.5
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 3.9e-72 275.8 243 59.3
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 5.1e-72 275.4 228 60.5
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 5.1e-72 275.4 228 61.8
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 8.7e-72 274.6 223 61.0
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 8.7e-72 274.6 236 57.2
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 8.7e-72 274.6 293 51.2
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 8.7e-72 274.6 239 58.6
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 8.7e-72 274.6 245 58.0
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 8.7e-72 274.6 241 58.1
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 1.1e-71 274.2 241 57.3
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 2.5e-71 273.1 228 59.6
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 2.5e-71 273.1 213 62.4
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 2.5e-71 273.1 227 60.4
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 2.5e-71 273.1 203 63.5
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 3.3e-71 272.7 258 56.2
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 3.3e-71 272.7 275 53.8
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 4.3e-71 272.3 287 51.9
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 4.3e-71 272.3 273 53.1
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 4.3e-71 272.3 233 59.7
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 5.7e-71 271.9 230 59.1
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 9.7e-71 271.2 213 62.4
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 9.7e-71 271.2 261 55.2
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 1.6e-70 270.4 241 56.0
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 2.2e-70 270.0 228 59.2
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 2.2e-70 270.0 223 60.5
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 4.8e-70 268.9 233 60.5
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 6.3e-70 268.5 231 58.4
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 8.2e-70 268.1 240 58.3
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 1.1e-69 267.7 216 62.0
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 1.1e-69 267.7 202 63.9
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 1.4e-69 267.3 281 53.0
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 1.4e-69 267.3 234 60.7
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 4.1e-69 265.8 204 62.7
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 5.3e-69 265.4 247 56.7
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 5.3e-69 265.4 247 56.7
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 5.3e-69 265.4 247 56.7
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 6.9e-69 265.0 235 57.9
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.2e-68 264.2 238 58.4
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 4.5e-68 262.3 282 50.7
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 4.5e-68 262.3 238 57.1
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 4.5e-68 262.3 236 55.9
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 2.2e-67 260.0 203 61.1
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 2.9e-67 259.6 202 61.9
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 3.8e-67 259.2 239 55.2
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 1.1e-66 257.7 258 53.1
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 2.5e-66 256.5 234 53.8
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 6.1e-65 251.9 288 48.6
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 1.4e-64 250.8 276 54.0
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 7.4e-63 245.0 303 45.2
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 5.0e-59 232.3 213 51.6
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 1.8e-53 213.8 202 55.0
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 9.4e-50 201.4 257 44.4
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 1.6e-49 200.7 186 55.4
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 3.0e-48 196.4 163 58.9
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 4.4e-47 192.6 230 47.8
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 3.4e-31 139.8 216 41.2
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 1.8e-29 134.0 237 35.9
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 5.0e-27 125.9 242 34.3
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 1.4e-21 107.8 89 60.7
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 9.2e-21 105.1 140 39.3
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 2.0e-20 104.0 154 39.6
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 1.1e-18 98.2 165 40.6
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 6.4e-14 82.4 79 58.2
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 3.5e-12 76.6 89 51.7
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 2.3e-08 63.9 125 32.8
Cre02.g093650 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D044287 6.4e-06 55.8 109 32.1


User provided reference genes

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