Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.2e-152 543.1 271 100.0
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.1e-132 475.3 327 75.5
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 6.0e-112 407.9 327 63.6
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 3.1e-108 395.6 327 61.2
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 2.0e-107 392.9 298 63.8
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 3.8e-106 388.7 327 59.6
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 1.1e-105 387.1 327 59.6
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 1.1e-105 387.1 327 59.9
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.4e-105 386.7 327 59.6
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.9e-105 386.3 327 59.6
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.5e-105 386.0 327 59.9
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 3.2e-105 385.6 327 59.9
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 3.2e-105 385.6 327 59.6
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 4.2e-105 385.2 327 59.3
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 5.5e-105 384.8 327 58.7
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 7.1e-105 384.4 327 59.9
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 7.1e-105 384.4 327 59.6
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 9.3e-105 384.0 327 59.3
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 9.3e-105 384.0 327 59.6
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 9.3e-105 384.0 327 59.0
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 1.6e-104 383.3 327 58.7
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 1.6e-104 383.3 327 59.0
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 2.1e-104 382.9 327 58.7
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 2.1e-104 382.9 327 59.6
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 2.7e-104 382.5 327 59.3
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 2.7e-104 382.5 327 58.7
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 2.7e-104 382.5 327 59.3
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 3.5e-104 382.1 327 59.0
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 3.5e-104 382.1 327 59.0
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 4.6e-104 381.7 327 58.1
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 6.0e-104 381.3 327 59.3
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 7.9e-104 380.9 327 59.0
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 7.9e-104 380.9 328 59.1
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.0e-103 380.6 327 58.7
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.0e-103 380.6 327 59.0
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.0e-103 380.6 327 58.4
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.3e-103 380.2 327 58.7
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.3e-103 380.2 326 58.9
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.3e-103 380.2 327 59.0
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.3e-103 380.2 327 58.7
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.8e-103 379.8 327 58.7
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.3e-103 379.4 327 58.1
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 2.3e-103 379.4 327 58.4
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 3.0e-103 379.0 327 58.7
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 3.9e-103 378.6 327 58.1
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 3.9e-103 378.6 327 58.7
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 6.7e-103 377.9 327 58.1
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 6.7e-103 377.9 335 57.6
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 8.7e-103 377.5 327 57.5
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 8.7e-103 377.5 326 59.2
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 1.1e-102 377.1 327 57.8
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.1e-102 377.1 327 57.8
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 1.1e-102 377.1 327 57.2
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.5e-102 376.7 327 58.1
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 1.9e-102 376.3 327 58.4
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 2.5e-102 375.9 327 57.5
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 2.5e-102 375.9 327 57.8
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 4.3e-102 375.2 327 58.4
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 4.3e-102 375.2 327 57.5
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 4.3e-102 375.2 327 56.9
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 4.3e-102 375.2 327 58.4
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 4.3e-102 375.2 326 58.0
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 5.7e-102 374.8 327 57.8
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 7.4e-102 374.4 327 58.7
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 9.7e-102 374.0 327 57.5
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 9.7e-102 374.0 327 57.8
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 9.7e-102 374.0 327 58.1
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 1.3e-101 373.6 327 57.2
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.6e-101 373.2 327 57.2
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 2.2e-101 372.9 327 57.5
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 2.2e-101 372.9 327 59.0
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 2.2e-101 372.9 327 58.1
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 2.2e-101 372.9 327 57.5
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 2.8e-101 372.5 327 56.0
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 2.8e-101 372.5 327 56.6
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 2.8e-101 372.5 327 56.9
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 3.7e-101 372.1 327 57.2
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 3.7e-101 372.1 327 57.2
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 4.8e-101 371.7 327 57.5
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 6.3e-101 371.3 327 56.6
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 8.2e-101 370.9 327 57.8
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 8.2e-101 370.9 327 58.4
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 8.2e-101 370.9 327 57.2
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 8.2e-101 370.9 325 57.5
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.1e-100 370.5 327 56.9
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.8e-100 369.8 327 58.4
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 1.8e-100 369.8 343 55.7
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.4e-100 369.4 327 57.2
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 3.1e-100 369.0 327 56.3
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 4.1e-100 368.6 327 56.3
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 4.1e-100 368.6 327 56.0
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 6.9e-100 367.9 327 56.9
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 6.9e-100 367.9 327 56.9
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 2.0e-99 366.3 327 57.5
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 2.6e-99 365.9 327 56.3
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 2.6e-99 365.9 327 56.9
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 5.0e-98 361.7 327 56.3
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 1.9e-97 359.8 327 56.0
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 4.2e-97 358.6 318 56.3
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 7.9e-96 354.4 299 59.5
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 1.0e-95 354.0 381 50.1
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 8.8e-95 350.9 327 54.7
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 4.3e-94 348.6 327 54.1
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 2.4e-92 342.8 326 53.1
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 2.9e-90 335.9 327 54.7
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 1.1e-89 334.0 304 56.6
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 2.5e-89 332.8 304 56.2
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.0e-86 323.2 309 54.7
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 2.2e-82 309.7 309 53.7
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 8.8e-79 297.7 328 48.8
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 1.4e-76 290.4 376 45.5
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 5.9e-75 285.0 278 57.2
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 5.3e-68 261.9 366 41.5
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 5.9e-59 231.9 158 70.3
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 3.8e-58 229.2 158 69.0
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 1.9e-57 226.9 158 68.4
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 2.5e-57 226.5 156 69.2
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 1.6e-56 223.8 158 68.4
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 1.0e-55 221.1 158 66.5
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 3.8e-50 202.6 177 57.1
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 2.1e-35 153.7 147 53.7
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.5e-35 152.9 287 32.1
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 9.2e-28 128.3 111 58.6
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.7e-27 126.7 112 55.4
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 5.1e-10 69.3 59 57.6


User provided reference genes

Program Settings