Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 6.1e-32 140.2 70 100.0
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 6.1e-16 87.0 59 71.2
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 6.1e-16 87.0 62 64.5
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 8.0e-16 86.7 59 69.5
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 8.0e-16 86.7 59 69.5
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 8.0e-16 86.7 62 64.5
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.4e-15 85.9 59 69.5
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 2.3e-15 85.1 59 67.8
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 2.3e-15 85.1 59 67.8
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 3.0e-15 84.7 66 65.2
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 3.9e-15 84.3 60 70.0
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 5.2e-15 84.0 61 70.5
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 6.7e-15 83.6 59 64.4
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 8.8e-15 83.2 60 70.0
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 8.8e-15 83.2 60 70.0
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 8.8e-15 83.2 61 68.9
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 8.8e-15 83.2 61 60.7
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 1.1e-14 82.8 60 70.0
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.5e-14 82.4 61 67.2
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 1.5e-14 82.4 60 63.3
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.5e-14 82.4 61 68.9
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 1.5e-14 82.4 64 64.1
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 1.5e-14 82.4 60 68.3
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.5e-14 82.4 61 67.2
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 2.0e-14 82.0 61 65.6
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 2.0e-14 82.0 61 65.6
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 2.0e-14 82.0 60 68.3
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 2.6e-14 81.6 61 65.6
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 2.6e-14 81.6 59 62.7
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 2.6e-14 81.6 60 65.0
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 3.3e-14 81.3 60 66.7
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 3.3e-14 81.3 60 68.3
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 3.3e-14 81.3 61 65.6
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 4.4e-14 80.9 59 69.5
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 4.4e-14 80.9 59 69.5
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 4.4e-14 80.9 61 65.6
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 5.7e-14 80.5 61 65.6
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 5.7e-14 80.5 60 68.3
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 5.7e-14 80.5 60 68.3
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 5.7e-14 80.5 68 60.3
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 5.7e-14 80.5 60 65.0
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 9.7e-14 79.7 59 66.1
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 9.7e-14 79.7 59 66.1
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 9.7e-14 79.7 59 69.5
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 9.7e-14 79.7 59 66.1
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 9.7e-14 79.7 61 63.9
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.3e-13 79.3 62 64.5
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 1.3e-13 79.3 62 64.5
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.3e-13 79.3 67 61.2
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.3e-13 79.3 61 63.9
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.3e-13 79.3 61 65.6
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.3e-13 79.3 59 64.4
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 1.7e-13 79.0 57 66.7
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 1.7e-13 79.0 61 62.3
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.7e-13 79.0 61 65.6
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 1.7e-13 79.0 59 62.7
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 2.2e-13 78.6 61 60.7
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 2.2e-13 78.6 59 66.1
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 2.2e-13 78.6 59 66.1
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 2.2e-13 78.6 59 64.4
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 2.8e-13 78.2 59 66.1
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 2.8e-13 78.2 61 62.3
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 2.8e-13 78.2 61 62.3
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 2.8e-13 78.2 61 62.3
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 2.8e-13 78.2 60 63.3
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 3.7e-13 77.8 59 66.1
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 3.7e-13 77.8 59 64.4
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 3.7e-13 77.8 59 64.4
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 3.7e-13 77.8 59 64.4
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 3.7e-13 77.8 59 61.0
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 3.7e-13 77.8 62 61.3
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 4.8e-13 77.4 61 60.7
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 4.8e-13 77.4 60 65.0
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 4.8e-13 77.4 59 61.0
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 4.8e-13 77.4 64 60.9
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 4.8e-13 77.4 64 60.9
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.3e-13 77.0 61 63.9
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.3e-13 77.0 61 63.9
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 6.3e-13 77.0 59 64.4
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 8.2e-13 76.6 59 62.7
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 1.1e-12 76.3 62 62.9
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 1.1e-12 76.3 61 62.3
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 1.1e-12 76.3 60 60.0
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 1.1e-12 76.3 59 64.4
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 1.8e-12 75.5 60 63.3
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 2.4e-12 75.1 59 61.0
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 4.1e-12 74.3 65 58.5
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 5.3e-12 73.9 58 58.6
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 9.1e-12 73.2 59 64.4
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 9.1e-12 73.2 59 64.4
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 9.1e-12 73.2 59 61.0
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.6e-11 72.4 59 62.7
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.6e-11 72.4 59 62.7
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.6e-11 72.4 59 62.7
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 3.5e-11 71.2 58 62.1
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 1.7e-10 68.9 59 55.9
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 2.2e-10 68.6 70 54.3
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 6.7e-07 57.0 57 57.9
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 8.8e-07 56.6 47 61.7
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 8.8e-07 56.6 32 75.0


User provided reference genes

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