Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_5350 Physcomitrium patens HOM05D001968 ORTHO05D001940 7.3e-87 323.9 172 100.0
Pp3c16_10550 Physcomitrium patens HOM05D001968 ORTHO05D001940 2.2e-51 206.1 175 67.4
Mapoly0044s0049 Marchantia polymorpha HOM05D001968 ORTHO05D001940 3.9e-24 115.5 170 41.2
Zm00001eb125820 Zea mays HOM05D001968 ORTHO05D001940 7.7e-12 74.7 134 36.6
Gohir.A04G141500 Gossypium hirsutum HOM05D001968 ORTHO05D001940 1.7e-11 73.6 138 34.1
Gohir.D04G187400 Gossypium hirsutum HOM05D001968 ORTHO05D001940 2.9e-11 72.8 138 34.1
Gorai.012G181000 Gossypium raimondii HOM05D001968 ORTHO05D001940 2.9e-11 72.8 138 34.1
CiPaw.03G067000 Carya illinoinensis HOM05D001968 ORTHO05D001940 3.8e-11 72.4 108 37.0
SEGI_03175 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 6.5e-11 71.6 89 39.3
Lsat_1_v5_gn_3_54461 Lactuca sativa HOM05D001968 ORTHO05D001940 2.5e-10 69.7 83 38.6
Sed0008137 Sechium edule HOM05D001968 ORTHO05D001940 2.5e-10 69.7 124 34.7
Aqoxy7G01037 Aquilegia oxysepala HOM05D001968 ORTHO05D001940 4.2e-10 68.9 155 31.0
HPP92_004880 Vanilla planifolia HOM05D001968 ORTHO05D001940 4.2e-10 68.9 103 37.9
Sopen05g004190 Solanum pennellii HOM05D001968 ORTHO05D001940 9.4e-10 67.8 81 38.3
PGSC0003DMG400030508 Solanum tuberosum HOM05D001968 ORTHO05D001940 9.4e-10 67.8 81 38.3
TAR622G0368 Trochodendron aralioides HOM05D001968 ORTHO05D001940 9.4e-10 67.8 102 35.3
Duzib251G0146 Durio zibethinus HOM05D001968 ORTHO05D001940 1.2e-09 67.4 138 32.6
Nn4g24078 Nelumbo nucifera HOM05D001968 ORTHO05D001940 1.2e-09 67.4 99 35.4
TAR629G0131 Trochodendron aralioides HOM05D001968 ORTHO05D001940 1.2e-09 67.4 140 32.1
TPR.G4820 Trifolium pratense HOM05D001968 ORTHO05D001940 1.6e-09 67.0 66 45.5
PGR102G3320 Punica granatum HOM05D001968 ORTHO05D001940 2.1e-09 66.6 140 32.9
SEGI_10494 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 2.1e-09 66.6 96 40.6
ClCG01G006150 Citrullus lanatus HOM05D001968 ORTHO05D001940 3.6e-09 65.9 131 30.5
Manes.14G135200 Manihot esculenta HOM05D001968 ORTHO05D001940 4.7e-09 65.5 81 39.5
Zm00001eb125830 Zea mays HOM05D001968 ORTHO05D001940 4.7e-09 65.5 90 41.1
SEGI_07289 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 6.1e-09 65.1 118 36.4
TWI31G1226 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 8.0e-09 64.7 109 33.9
Nitab4.5_0006134g0050 Nicotiana tabacum HOM05D001968 ORTHO05D001940 1.0e-08 64.3 70 40.0
QL01p002142 Quercus lobata HOM05D001968 ORTHO05D001940 1.0e-08 64.3 82 36.6
Lj5g0010869 Lotus japonicus HOM05D001968 ORTHO05D001940 1.4e-08 63.9 74 39.2
Thecc.04G124200 Theobroma cacao HOM05D001968 ORTHO05D001940 1.4e-08 63.9 97 32.0
TWI53G0947 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 1.4e-08 63.9 143 34.3
Carub.0001s1478 Capsella rubella HOM05D001968 ORTHO05D001940 1.8e-08 63.5 158 33.5
CARHR015550 Cardamine hirsuta HOM05D001968 ORTHO05D001940 1.8e-08 63.5 99 36.4
Haze_11030 Corylus avellana HOM05D001968 ORTHO05D001940 1.8e-08 63.5 82 35.4
SEGI_04402 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 1.8e-08 63.5 123 35.0
SGA_v2.0_scaffold50G18527 Striga asiatica HOM05D001968 ORTHO05D001940 1.8e-08 63.5 95 36.8
Nn4g24081 Nelumbo nucifera HOM05D001968 ORTHO05D001940 2.3e-08 63.2 117 28.2
Os01g0121500 Oryza sativa ssp. japonica HOM05D001968 ORTHO05D001940 2.3e-08 63.2 90 38.9
Os01g0121600 Oryza sativa ssp. japonica HOM05D001968 ORTHO05D001940 2.3e-08 63.2 153 34.0
PSO017G4532 Papaver somniferum HOM05D001968 ORTHO05D001940 2.3e-08 63.2 160 26.9
QL02p048959 Quercus lobata HOM05D001968 ORTHO05D001940 2.3e-08 63.2 106 37.7
SEGI_34987 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 2.3e-08 63.2 117 38.5
Cpa.g.sc65.117 Carica papaya HOM05D001968 ORTHO05D001940 3.0e-08 62.8 100 34.0
Duzib248G0253 Durio zibethinus HOM05D001968 ORTHO05D001940 3.0e-08 62.8 80 37.5
Nn3g18058 Nelumbo nucifera HOM05D001968 ORTHO05D001940 3.0e-08 62.8 85 35.3
Oeu044340.1 Olea europaea HOM05D001968 ORTHO05D001940 3.0e-08 62.8 103 35.0
Sopen04g002700 Solanum pennellii HOM05D001968 ORTHO05D001940 3.0e-08 62.8 139 29.5
Cfa007865 Carpinus fangiana HOM05D001968 ORTHO05D001940 3.9e-08 62.4 136 32.4
Peaxi162Scf00205g00032 Petunia axillaris HOM05D001968 ORTHO05D001940 3.9e-08 62.4 82 35.4
QL02p048804 Quercus lobata HOM05D001968 ORTHO05D001940 3.9e-08 62.4 79 36.7
ATR0326G002 Amborella trichopoda HOM05D001968 ORTHO05D001940 5.2e-08 62.0 120 30.0
Lj5g0009207 Lotus japonicus HOM05D001968 ORTHO05D001940 5.2e-08 62.0 74 37.8
Sc04g0005740 Simmondsia chinensis HOM05D001968 ORTHO05D001940 5.2e-08 62.0 76 39.5
CAN.G625.73 Capsicum annuum HOM05D001968 ORTHO05D001940 6.7e-08 61.6 125 31.2
Prupe.1G322400 Prunus persica HOM05D001968 ORTHO05D001940 6.7e-08 61.6 80 35.0
RcHm_v2.0_Chr4g0440931 Rosa chinensis HOM05D001968 ORTHO05D001940 6.7e-08 61.6 87 37.9
Solyc05g008360.1 Solanum lycopersicum HOM05D001968 ORTHO05D001940 6.7e-08 61.6 62 43.5
MSTRG.889 Avicennia marina HOM05D001968 ORTHO05D001940 8.8e-08 61.2 92 38.0
Cfa007867 Carpinus fangiana HOM05D001968 ORTHO05D001940 8.8e-08 61.2 130 36.2
Haze_11031 Corylus avellana HOM05D001968 ORTHO05D001940 8.8e-08 61.2 132 30.3
FAN12G2748 Fragaria x ananassa HOM05D001968 ORTHO05D001940 8.8e-08 61.2 87 37.9
TPR.G4890 Trifolium pratense HOM05D001968 ORTHO05D001940 8.8e-08 61.2 122 32.0
Cfa007866 Carpinus fangiana HOM05D001968 ORTHO05D001940 1.1e-07 60.8 89 36.0
DCAR_007281 Daucus carota HOM05D001968 ORTHO05D001940 1.1e-07 60.8 105 28.6
DCAR_026765 Daucus carota HOM05D001968 ORTHO05D001940 1.1e-07 60.8 87 40.2
Nitab4.5_0000414g0150 Nicotiana tabacum HOM05D001968 ORTHO05D001940 1.1e-07 60.8 91 33.0
Oeu045884.1 Olea europaea HOM05D001968 ORTHO05D001940 1.1e-07 60.8 81 38.3
Atru.chr1.1756 Acer truncatum HOM05D001968 ORTHO05D001940 1.5e-07 60.5 115 35.7
Atru.chr1.1766 Acer truncatum HOM05D001968 ORTHO05D001940 1.5e-07 60.5 128 33.6
Cfa008582 Carpinus fangiana HOM05D001968 ORTHO05D001940 1.5e-07 60.5 82 35.4
CiPaw.03G066800 Carya illinoinensis HOM05D001968 ORTHO05D001940 1.5e-07 60.5 115 33.9
Eucgr.B02892 Eucalyptus grandis HOM05D001968 ORTHO05D001940 1.5e-07 60.5 137 32.8
FvH4_4g32190 Fragaria vesca HOM05D001968 ORTHO05D001940 1.5e-07 60.5 87 37.9
Manes.06G061500 Manihot esculenta HOM05D001968 ORTHO05D001940 1.5e-07 60.5 83 37.3
Peaxi162Scf00119g01511 Petunia axillaris HOM05D001968 ORTHO05D001940 1.5e-07 60.5 85 32.9
Psat6g221440 Pisum sativum HOM05D001968 ORTHO05D001940 1.5e-07 60.5 71 39.4
Nn3g18061 Nelumbo nucifera HOM05D001968 ORTHO05D001940 2.0e-07 60.1 85 35.3
QL01p002146 Quercus lobata HOM05D001968 ORTHO05D001940 2.0e-07 60.1 78 35.9
QL07p035396 Quercus lobata HOM05D001968 ORTHO05D001940 2.0e-07 60.1 134 30.6
Manes.01G114700 Manihot esculenta HOM05D001968 ORTHO05D001940 2.6e-07 59.7 149 30.9
Manes.02G073500 Manihot esculenta HOM05D001968 ORTHO05D001940 2.6e-07 59.7 114 35.1
TAR622G1059 Trochodendron aralioides HOM05D001968 ORTHO05D001940 2.6e-07 59.7 71 40.8
TAR622G1432 Trochodendron aralioides HOM05D001968 ORTHO05D001940 2.6e-07 59.7 83 34.9
GSVIVG01030897001 Vitis vinifera HOM05D001968 ORTHO05D001940 2.6e-07 59.7 137 28.5
Eucgr.B02891 Eucalyptus grandis HOM05D001968 ORTHO05D001940 3.3e-07 59.3 136 30.9
Thhalv10009026m.g Eutrema salsugineum HOM05D001968 ORTHO05D001940 3.3e-07 59.3 96 36.5
Peaxi162Scf00119g01510 Petunia axillaris HOM05D001968 ORTHO05D001940 3.3e-07 59.3 81 33.3
PGR119G0797 Punica granatum HOM05D001968 ORTHO05D001940 3.3e-07 59.3 97 35.1
SEGI_02283 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 3.3e-07 59.3 100 33.0
SEGI_02912 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 3.3e-07 59.3 115 36.5
SEGI_32172 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 3.3e-07 59.3 115 36.5
PGSC0003DMG400005990 Solanum tuberosum HOM05D001968 ORTHO05D001940 3.3e-07 59.3 163 28.2
Atru.chr1.1727 Acer truncatum HOM05D001968 ORTHO05D001940 4.4e-07 58.9 93 34.4
Atru.chr1.1745 Acer truncatum HOM05D001968 ORTHO05D001940 4.4e-07 58.9 93 34.4
Ciclev10012971m.g Citrus clementina HOM05D001968 ORTHO05D001940 4.4e-07 58.9 144 34.0
FAN07G2286 Fragaria x ananassa HOM05D001968 ORTHO05D001940 4.4e-07 58.9 87 37.9
Gorai.008G058100 Gossypium raimondii HOM05D001968 ORTHO05D001940 4.4e-07 58.9 105 31.4
MBI10_g07289_MAGBIO Magnolia biondii HOM05D001968 ORTHO05D001940 4.4e-07 58.9 105 29.5
MBI16_g32958_MAGBIO Magnolia biondii HOM05D001968 ORTHO05D001940 4.4e-07 58.9 109 32.1
Nitab4.5_0000414g0120 Nicotiana tabacum HOM05D001968 ORTHO05D001940 4.4e-07 58.9 80 35.0
Oeu031606.1 Olea europaea HOM05D001968 ORTHO05D001940 4.4e-07 58.9 103 34.0
Oeu044338.1 Olea europaea HOM05D001968 ORTHO05D001940 4.4e-07 58.9 75 34.7
Solyc04g007620.1 Solanum lycopersicum HOM05D001968 ORTHO05D001940 4.4e-07 58.9 103 33.0
AT1G15010 Arabidopsis thaliana HOM05D001968 ORTHO05D001940 5.7e-07 58.5 96 36.5
BcaB03g13077 Brassica carinata HOM05D001968 ORTHO05D001940 5.7e-07 58.5 94 36.2
COL.COLO4_27128 Corchorus olitorius HOM05D001968 ORTHO05D001940 5.7e-07 58.5 88 35.2
FAN17G2044 Fragaria x ananassa HOM05D001968 ORTHO05D001940 5.7e-07 58.5 87 37.9
Gohir.A01G153600 Gossypium hirsutum HOM05D001968 ORTHO05D001940 5.7e-07 58.5 115 33.9
Atru.chr11.389 Acer truncatum HOM05D001968 ORTHO05D001940 7.4e-07 58.2 133 27.8
AL1G27070 Arabidopsis lyrata HOM05D001968 ORTHO05D001940 7.4e-07 58.2 99 36.4
BcaC07g38767 Brassica carinata HOM05D001968 ORTHO05D001940 7.4e-07 58.2 94 35.1
A08p31750 Brassica napus HOM05D001968 ORTHO05D001940 7.4e-07 58.2 84 35.7
C08p17000 Brassica napus HOM05D001968 ORTHO05D001940 7.4e-07 58.2 94 35.1
BraA08t35097Z Brassica rapa HOM05D001968 ORTHO05D001940 7.4e-07 58.2 84 35.7
Gohir.A07G075900 Gossypium hirsutum HOM05D001968 ORTHO05D001940 7.4e-07 58.2 76 35.5
Hma1.2p1_0114F.1_g055160 Hydrangea macrophylla HOM05D001968 ORTHO05D001940 7.4e-07 58.2 85 32.9
Lj6C748T6 Lonicera japonica HOM05D001968 ORTHO05D001940 7.4e-07 58.2 85 30.6
Sp1g13400 Schrenkiella parvula HOM05D001968 ORTHO05D001940 7.4e-07 58.2 148 31.8
Thecc.04G124300 Theobroma cacao HOM05D001968 ORTHO05D001940 7.4e-07 58.2 82 29.3
Atru.chr1.1728 Acer truncatum HOM05D001968 ORTHO05D001940 9.7e-07 57.8 88 37.5
Atru.chr1.1744 Acer truncatum HOM05D001968 ORTHO05D001940 9.7e-07 57.8 88 37.5
Ca_11095_v3 Cicer arietinum L. HOM05D001968 ORTHO05D001940 9.7e-07 57.8 82 36.6
Ciclev10013026m.g Citrus clementina HOM05D001968 ORTHO05D001940 9.7e-07 57.8 85 34.1
Dinv33985 Davidia involucrata HOM05D000692 ORTHO05D000533 9.7e-07 57.8 107 31.8
Thhalv10001173m.g Eutrema salsugineum HOM05D001968 ORTHO05D001940 9.7e-07 57.8 139 30.9
Medtr1g108330 Medicago truncatula HOM05D001968 ORTHO05D001940 9.7e-07 57.8 71 39.4
Potri.008G127800 Populus trichocarpa HOM05D001968 ORTHO05D001940 9.7e-07 57.8 104 28.8
Rhsim09G0102900 Rhododendron simsii HOM05D001968 ORTHO05D001940 9.7e-07 57.8 108 36.1
TWI79G0294 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 9.7e-07 57.8 105 31.4
Ah.16g101410 Amaranthus hybridus HOM05D000534 ORTHO05D000389 1.3e-06 57.4 117 29.9
BolC8t49325H Brassica oleracea HOM05D001968 ORTHO05D001940 1.3e-06 57.4 94 35.1
FAN17G1157 Fragaria x ananassa HOM05D001968 ORTHO05D001940 1.3e-06 57.4 85 31.8
Lalb_Chr21g0308491 Lupinus albus HOM05D001968 ORTHO05D001940 1.3e-06 57.4 126 31.0
MD13G1027500 Malus domestica HOM05D001968 ORTHO05D001940 1.3e-06 57.4 75 33.3
Nn3g18060 Nelumbo nucifera HOM05D001968 ORTHO05D001940 1.3e-06 57.4 153 28.1
Nn4g24079 Nelumbo nucifera HOM05D001968 ORTHO05D001940 1.3e-06 57.4 143 26.6
PGSC0003DMG400030672 Solanum tuberosum HOM05D001968 ORTHO05D001940 1.3e-06 57.4 95 31.6
Dinv14867 Davidia involucrata HOM05D001968 ORTHO05D001940 1.7e-06 57.0 80 35.0
Nitab4.5_0012569g0020 Nicotiana tabacum HOM05D001968 ORTHO05D001940 1.7e-06 57.0 81 35.8
TWI74G0924 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 1.7e-06 57.0 117 29.1
MSTRG.887 Avicennia marina HOM05D001968 ORTHO05D001940 2.2e-06 56.6 99 32.3
CiPaw.06G013300 Carya illinoinensis HOM05D001968 ORTHO05D001940 2.2e-06 56.6 74 33.8
Eucgr.B02890 Eucalyptus grandis HOM05D001968 ORTHO05D001940 2.2e-06 56.6 136 28.7
QL02p048874 Quercus lobata HOM05D001968 ORTHO05D001940 2.2e-06 56.6 126 29.4
VMungo1383G1229 Vigna mungo HOM05D001968 ORTHO05D001940 2.2e-06 56.6 111 32.4
COL.COLO4_20458 Corchorus olitorius HOM05D000435 ORTHO05D007717 2.8e-06 56.2 137 30.7
FAN12G3982 Fragaria x ananassa HOM05D001968 ORTHO05D001940 2.8e-06 56.2 85 31.8
Gorai.001G085400 Gossypium raimondii HOM05D001968 ORTHO05D001940 2.8e-06 56.2 100 36.0
Lalb_Chr02g0145511 Lupinus albus HOM05D001968 ORTHO05D001940 2.8e-06 56.2 94 30.9
SEGI_36587 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 2.8e-06 56.2 103 33.0
Thecc.02G278700 Theobroma cacao HOM05D001968 ORTHO05D001940 2.8e-06 56.2 104 29.8
TAR374G0093 Trochodendron aralioides HOM05D001968 ORTHO05D001940 2.8e-06 56.2 88 33.0
TAR374G0206 Trochodendron aralioides HOM05D001968 ORTHO05D001940 2.8e-06 56.2 88 33.0
GSVIVG01030903001 Vitis vinifera HOM05D001968 ORTHO05D001940 2.8e-06 56.2 96 33.3
AL5G10260 Arabidopsis lyrata HOM05D001968 ORTHO05D001940 3.7e-06 55.8 152 29.6
BraA06t27324Z Brassica rapa HOM05D001968 ORTHO05D001940 3.7e-06 55.8 82 35.4
Eucgr.F02812 Eucalyptus grandis HOM05D001968 ORTHO05D001940 3.7e-06 55.8 142 30.3
Hma1.2p1_0114F.1_g055150 Hydrangea macrophylla HOM05D001968 ORTHO05D001940 3.7e-06 55.8 85 36.5
Hma1.2p1_3333F.1_g335315 Hydrangea macrophylla HOM05D001968 ORTHO05D001940 3.7e-06 55.8 85 36.5
Nitab4.5_0003598g0120 Nicotiana tabacum HOM05D001968 ORTHO05D001940 3.7e-06 55.8 95 32.6
CANSAT64G0559 Cannabis sativa HOM05D001968 ORTHO05D001940 4.8e-06 55.5 114 31.6
FvH4_4g32180 Fragaria vesca HOM05D001968 ORTHO05D001940 4.8e-06 55.5 85 31.8
FAN22G2210 Fragaria x ananassa HOM05D001968 ORTHO05D001940 4.8e-06 55.5 85 31.8
RcHm_v2.0_Chr4g0440921 Rosa chinensis HOM05D001968 ORTHO05D001940 4.8e-06 55.5 85 30.6
SalBow8G4736 Salvia bowleyana HOM05D001968 ORTHO05D001940 4.8e-06 55.5 109 31.2
Sc10g0000950 Simmondsia chinensis HOM05D001968 ORTHO05D001940 4.8e-06 55.5 75 34.7
Solyc02g091260.1 Solanum lycopersicum HOM05D001968 ORTHO05D001940 4.8e-06 55.5 83 32.5
Sopen02g035880 Solanum pennellii HOM05D001968 ORTHO05D001940 4.8e-06 55.5 83 32.5
Atru.chr1.1747 Acer truncatum HOM05D001968 ORTHO05D001940 6.3e-06 55.1 138 31.9
Cc11_g08920 Coffea canephora HOM05D001968 ORTHO05D001940 6.3e-06 55.1 85 31.8
Duzib251G0732 Durio zibethinus HOM05D001968 ORTHO05D001940 6.3e-06 55.1 76 39.5
Gohir.D12G055300 Gossypium hirsutum HOM05D001968 ORTHO05D001940 6.3e-06 55.1 105 29.5
HanXRQChr12g0363671 Helianthus annuus HOM05D001968 ORTHO05D001940 6.3e-06 55.1 97 34.0
Lj5g0003663 Lotus japonicus HOM05D001968 ORTHO05D001940 6.3e-06 55.1 88 30.7
Peaxi162Scf00104g00191 Petunia axillaris HOM05D001968 ORTHO05D001940 6.3e-06 55.1 91 30.8
Phvul.L001619 Phaseolus vulgaris HOM05D001968 ORTHO05D001940 6.3e-06 55.1 80 32.5
THA.LOC104824149 Tarenaya hassleriana HOM05D001968 ORTHO05D001940 6.3e-06 55.1 78 34.6
Atru.chr1.1726 Acer truncatum HOM05D001968 ORTHO05D001940 8.2e-06 54.7 138 31.9
MSTRG.888 Avicennia marina HOM05D001968 ORTHO05D001940 8.2e-06 54.7 83 34.9
CiPaw.03G067100 Carya illinoinensis HOM05D001968 ORTHO05D001940 8.2e-06 54.7 137 27.0
FAN07G0422 Fragaria x ananassa HOM05D001968 ORTHO05D001940 8.2e-06 54.7 138 29.0
Gorai.002G181000 Gossypium raimondii HOM05D001968 ORTHO05D001940 8.2e-06 54.7 146 30.1
Potri.010G115100 Populus trichocarpa HOM05D001968 ORTHO05D001940 8.2e-06 54.7 76 32.9
Rhsim09G0100300 Rhododendron simsii HOM05D001968 ORTHO05D001940 8.2e-06 54.7 101 33.7
SEGI_21443 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 8.2e-06 54.7 141 27.7


User provided reference genes

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