Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.5e-304 1046.6 525 100.0
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.2e-219 765.8 527 73.8
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.8e-214 748.0 530 72.8
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.4e-196 688.7 521 66.2
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.5e-164 582.4 520 60.0
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 7.1e-109 398.7 524 42.9
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.4e-104 384.4 518 41.3
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.0e-103 380.6 518 41.5
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 6.4e-102 375.6 457 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 1.9e-98 364.0 526 40.9
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 5.1e-83 312.8 499 38.3
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 3.6e-60 236.9 436 34.2
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.7e-47 194.1 221 44.3
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 9.1e-40 169.1 211 42.7
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.3e-38 165.2 219 39.3
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.5e-37 161.8 227 36.6
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 1.5e-37 161.8 211 42.2
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 1.9e-37 161.4 225 37.8
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 2.5e-37 161.0 217 38.7
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 3.2e-37 160.6 212 39.6
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 3.2e-37 160.6 236 37.7
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 3.2e-37 160.6 234 36.8
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 5.5e-37 159.8 226 37.2
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 7.2e-37 159.5 208 41.8
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 7.2e-37 159.5 210 40.5
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 9.5e-37 159.1 225 37.8
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 1.6e-36 158.3 253 35.6
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.1e-36 157.9 227 36.1
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.8e-36 157.5 225 36.9
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 2.8e-36 157.5 232 37.1
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 2.8e-36 157.5 232 37.1
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 3.6e-36 157.1 230 36.5
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 3.6e-36 157.1 216 39.4
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 3.6e-36 157.1 269 34.6
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 4.7e-36 156.8 210 41.0
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 4.7e-36 156.8 208 38.0
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 6.1e-36 156.4 203 41.4
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 8.0e-36 156.0 213 37.6
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 8.0e-36 156.0 258 35.7
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 3.0e-35 154.1 213 39.9
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 3.0e-35 154.1 224 37.5
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 4.0e-35 153.7 238 34.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 4.0e-35 153.7 228 33.8
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 4.0e-35 153.7 204 37.7
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 5.2e-35 153.3 208 38.5
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 5.2e-35 153.3 219 35.2
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 6.8e-35 152.9 219 36.5
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 8.8e-35 152.5 210 38.1
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.2e-34 152.1 217 35.9
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 1.2e-34 152.1 213 35.7
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 1.2e-34 152.1 246 35.4
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.2e-34 152.1 210 39.0
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.5e-34 151.8 220 36.4
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 3.4e-34 150.6 217 34.1
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 5.7e-34 149.8 228 33.8
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 5.7e-34 149.8 224 37.1
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 5.7e-34 149.8 209 37.3
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 5.7e-34 149.8 226 38.5
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 7.5e-34 149.4 208 40.4
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 7.5e-34 149.4 242 34.3
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 9.8e-34 149.1 217 34.1
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 9.8e-34 149.1 226 37.2
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 9.8e-34 149.1 226 37.2
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 9.8e-34 149.1 208 39.9
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 9.8e-34 149.1 199 39.7
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 1.3e-33 148.7 205 37.1
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.7e-33 148.3 211 37.9
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.7e-33 148.3 226 37.2
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.7e-33 148.3 219 34.7
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 2.8e-33 147.5 272 33.1
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 2.8e-33 147.5 223 36.3
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 2.8e-33 147.5 227 33.9
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 3.7e-33 147.1 223 36.3
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 3.7e-33 147.1 261 33.7
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 4.9e-33 146.7 228 34.2
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 6.3e-33 146.4 221 33.5
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 6.3e-33 146.4 232 33.2
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 6.3e-33 146.4 232 33.2
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 8.3e-33 146.0 209 38.8
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 8.3e-33 146.0 232 33.6
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 8.3e-33 146.0 208 38.9
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 1.1e-32 145.6 244 35.7
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 1.1e-32 145.6 195 39.0
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 1.8e-32 144.8 246 34.1
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.8e-32 144.8 249 33.3
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.4e-32 144.4 228 33.3
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 3.1e-32 144.1 208 39.4
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 4.1e-32 143.7 208 38.5
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.1e-32 143.7 204 37.7
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 4.1e-32 143.7 210 36.2
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 7.0e-32 142.9 205 39.5
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 7.0e-32 142.9 212 37.3
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 7.0e-32 142.9 245 33.5
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 7.0e-32 142.9 217 32.3
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 9.2e-32 142.5 212 38.2
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 9.2e-32 142.5 232 31.9
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.6e-31 141.7 212 37.7
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 2.0e-31 141.4 212 37.7
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 2.0e-31 141.4 211 38.4
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 2.7e-31 141.0 212 37.7
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 2.7e-31 141.0 212 37.3
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 7.8e-31 139.4 202 35.1
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 7.8e-31 139.4 217 33.2
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.0e-30 139.0 208 37.0
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 1.7e-30 138.3 233 32.6
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 2.3e-30 137.9 212 37.3
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 5.0e-30 136.7 228 33.8
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 8.6e-30 136.0 215 34.9
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.8e-27 128.3 213 36.2
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 8.9e-27 125.9 182 35.2
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.2e-25 121.3 232 37.5
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.4e-24 118.6 168 33.3
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.4e-24 118.6 232 37.1
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.8e-24 118.2 264 27.3
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 3.2e-24 117.5 233 36.5
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 4.1e-24 117.1 193 35.2
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 3.9e-22 110.5 231 34.6
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 2.8e-20 104.4 149 37.6
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 2.3e-19 101.3 205 32.7
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 2.4e-16 91.3 147 36.1
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 4.7e-12 77.0 101 37.6
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 6.4e-09 66.6 139 35.3
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.1e-08 65.9 102 38.2
ATR0661G115 Amborella trichopoda HOM05D000075 ORTHO05D000073 5.4e-08 63.5 172 32.0
HPP92_015405 Vanilla planifolia HOM05D001872 ORTHO05D001859 2.1e-07 61.6 218 31.7
HPP92_026992 Vanilla planifolia HOM05D001872 ORTHO05D001859 3.5e-07 60.8 213 31.5
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 6.0e-07 60.1 137 29.2
unitig_899.g15572 Utricularia gibba HOM05D000075 ORTHO05D000264 2.3e-06 58.2 165 33.3
SEGI_31072 Sequoiadendron giganteum HOM05D006196 ORTHO05D000036 3.0e-06 57.8 63 38.1
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 3.9e-06 57.4 88 33.0
Ciclev10005850m.g Citrus clementina HOM05D000075 ORTHO05D000073 3.9e-06 57.4 191 29.3
ECA238G3427 Erigeron canadensis HOM05D001872 ORTHO05D001859 3.9e-06 57.4 218 29.8
CSS0046087 Camellia sinensis var. sinensis HOM05D001872 ORTHO05D001859 8.6e-06 56.2 198 30.8
Nitab4.5_0004294g0060 Nicotiana tabacum HOM05D001872 ORTHO05D001859 8.6e-06 56.2 218 27.5


User provided reference genes

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