Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 5.9e-103 377.5 182 100.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 6.8e-59 231.1 195 60.5
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 5.2e-43 178.3 122 65.6
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 2.6e-34 149.4 124 55.6
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 4.4e-34 148.7 113 58.4
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.3e-33 147.1 117 53.8
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 2.2e-33 146.4 117 56.4
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 2.2e-33 146.4 118 58.5
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.9e-33 146.0 113 57.5
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 3.8e-33 145.6 118 55.1
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.8e-33 145.6 117 56.4
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.9e-33 145.2 113 57.5
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 4.9e-33 145.2 170 42.9
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 4.9e-33 145.2 111 58.6
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 6.4e-33 144.8 116 55.2
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.4e-33 144.8 119 53.8
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.4e-33 144.8 119 52.9
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 8.4e-33 144.4 126 52.4
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 8.4e-33 144.4 113 55.8
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 8.4e-33 144.4 129 50.4
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 1.1e-32 144.1 111 55.9
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 1.1e-32 144.1 111 55.9
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.1e-32 144.1 111 57.7
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 1.1e-32 144.1 117 56.4
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.1e-32 144.1 117 55.6
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 1.1e-32 144.1 113 55.8
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.1e-32 144.1 117 57.3
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.4e-32 143.7 111 58.6
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 1.9e-32 143.3 121 52.1
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.9e-32 143.3 117 54.7
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.4e-32 142.9 111 55.9
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 2.4e-32 142.9 111 55.9
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 2.4e-32 142.9 111 54.1
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 2.4e-32 142.9 125 52.0
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.4e-32 142.9 111 57.7
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.4e-32 142.9 116 55.2
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 3.2e-32 142.5 113 54.9
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 3.2e-32 142.5 113 54.9
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.2e-32 142.5 116 55.2
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 3.2e-32 142.5 116 55.2
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 4.1e-32 142.1 111 55.0
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 4.1e-32 142.1 113 54.9
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.1e-32 142.1 119 52.9
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.1e-32 142.1 113 54.0
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.1e-32 142.1 113 55.8
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 5.4e-32 141.7 117 55.6
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 7.1e-32 141.4 111 55.0
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 7.1e-32 141.4 117 53.0
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 7.1e-32 141.4 117 55.6
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 7.1e-32 141.4 117 53.8
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 7.1e-32 141.4 184 43.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 9.2e-32 141.0 121 52.1
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 9.2e-32 141.0 117 53.0
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.2e-31 140.6 117 54.7
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.2e-31 140.6 117 53.8
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.6e-31 140.2 117 53.8
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.6e-31 140.2 117 54.7
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.6e-31 140.2 111 54.1
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.6e-31 140.2 113 55.8
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.6e-31 140.2 111 54.1
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.6e-31 140.2 117 55.6
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 2.1e-31 139.8 113 55.8
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 2.1e-31 139.8 116 53.4
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 2.1e-31 139.8 116 54.3
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 2.1e-31 139.8 111 53.2
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.7e-31 139.4 117 53.0
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 2.7e-31 139.4 116 55.2
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.7e-31 139.4 137 46.7
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.7e-31 139.4 136 51.5
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.5e-31 139.0 117 52.1
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 3.5e-31 139.0 111 55.0
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 4.6e-31 138.7 148 44.6
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.6e-31 138.7 175 41.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 4.6e-31 138.7 117 53.8
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.6e-31 138.7 117 52.1
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 4.6e-31 138.7 118 54.2
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.0e-31 138.3 113 54.0
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 6.0e-31 138.3 156 44.2
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 7.8e-31 137.9 113 54.0
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.8e-31 137.9 113 54.0
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 7.8e-31 137.9 116 54.3
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.0e-30 137.5 117 52.1
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 1.0e-30 137.5 116 54.3
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.0e-30 137.5 116 54.3
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.0e-30 137.5 148 44.6
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.0e-30 137.5 116 53.4
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-30 137.1 112 53.6
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-30 137.1 112 53.6
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.3e-30 137.1 112 53.6
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.3e-30 137.1 112 53.6
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.3e-30 137.1 116 53.4
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 1.3e-30 137.1 147 44.2
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.3e-30 137.1 116 53.4
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.7e-30 136.7 112 53.6
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.7e-30 136.7 112 53.6
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.7e-30 136.7 111 54.1
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 2.3e-30 136.3 121 49.6
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 3.0e-30 136.0 113 54.0
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 3.0e-30 136.0 111 54.1
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.0e-30 136.0 111 54.1
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.0e-30 136.0 111 54.1
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 3.0e-30 136.0 113 53.1
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 3.9e-30 135.6 116 53.4
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 5.1e-30 135.2 117 51.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 5.1e-30 135.2 111 55.0
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 6.6e-30 134.8 111 54.1
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 6.6e-30 134.8 116 52.6
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 1.1e-29 134.0 116 51.7
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.1e-29 134.0 111 54.1
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.9e-29 133.3 114 53.5
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.9e-29 133.3 178 41.0
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.5e-29 132.9 116 50.0
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 9.6e-29 131.0 116 50.9
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.1e-28 129.8 117 54.7
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 2.4e-27 126.3 116 50.0
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 2.4e-27 126.3 111 50.5
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 6.9e-27 124.8 111 54.1
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 6.9e-27 124.8 104 51.0
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 6.9e-27 124.8 104 51.0
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.0e-26 123.2 104 51.0
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.8e-26 121.7 195 35.9
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 8.4e-25 117.9 117 46.2
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 1.1e-21 107.5 165 35.8
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 2.1e-20 103.2 117 44.4
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 3.6e-20 102.4 115 44.3
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 9.0e-19 97.8 62 67.7
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.4e-16 90.5 73 50.7
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 4.2e-16 89.0 72 50.0
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 7.1e-16 88.2 73 43.8
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.3e-12 77.4 60 50.0
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 1.4e-11 73.9 128 35.9
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.8e-11 73.6 67 44.8
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.2e-10 70.9 68 48.5
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 7.6e-10 68.2 46 65.2
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 8.4e-09 64.7 45 68.9
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.5e-07 59.3 50 54.0
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 4.6e-07 58.9 54 42.6
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 7.9e-07 58.2 83 37.3
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.3e-06 57.4 40 65.0
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.3e-06 56.6 43 58.1


User provided reference genes

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