Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_320 Physcomitrium patens HOM05D004443 ORTHO05D005421 0.0e+00 1758.4 914 100.0
Pp3c16_20900 Physcomitrium patens HOM05D004443 ORTHO05D005421 7.2e-234 814.7 902 55.0
AagrBONN_evm.TU.Sc2ySwM_117.523 Anthoceros agrestis HOM05D004443 ORTHO05D005421 3.1e-43 181.4 362 38.1
Mapoly0042s0023 Marchantia polymorpha HOM05D004443 ORTHO05D005421 4.0e-43 181.0 772 30.3
Nn5g28118 Nelumbo nucifera HOM05D004443 ORTHO05D005421 4.9e-41 174.1 143 64.3
Nitab4.5_0000193g0100 Nicotiana tabacum HOM05D004443 ORTHO05D005421 4.2e-40 171.0 240 45.4
DCAR_002660 Daucus carota HOM05D004443 ORTHO05D005421 7.1e-40 170.2 145 59.3
Nitab4.5_0000494g0040 Nicotiana tabacum HOM05D004443 ORTHO05D005421 2.1e-39 168.7 244 44.3
vmacro12543 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 7.9e-39 166.8 147 58.5
CDE11G0263 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 1.0e-38 166.4 144 63.2
HanXRQChr05g0151061 Helianthus annuus HOM05D004443 ORTHO05D005421 1.0e-38 166.4 147 58.5
Aqoxy5G02432 Aquilegia oxysepala HOM05D004443 ORTHO05D005421 3.0e-38 164.9 173 53.2
CANSAT64G0744 Cannabis sativa HOM05D004443 ORTHO05D005421 5.1e-38 164.1 144 58.3
MBI06_g01059_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 6.7e-38 163.7 202 47.5
SMO367G0158 Selaginella moellendorffii HOM05D004443 ORTHO05D005421 6.7e-38 163.7 143 60.8
Rhsim06G0108200 Rhododendron simsii HOM05D004443 ORTHO05D005421 8.7e-38 163.3 182 49.5
MSTRG.1478 Avicennia marina HOM05D004443 ORTHO05D005421 1.1e-37 162.9 143 60.1
BcaC08g45457 Brassica carinata HOM05D004443 ORTHO05D005421 1.1e-37 162.9 143 59.4
A07p27860 Brassica napus HOM05D004443 ORTHO05D005421 1.1e-37 162.9 143 59.4
BolC6t38247H Brassica oleracea HOM05D004443 ORTHO05D005421 1.1e-37 162.9 143 59.4
BraA07t30425Z Brassica rapa HOM05D004443 ORTHO05D005421 1.1e-37 162.9 143 59.4
FvH4_2g26330 Fragaria vesca HOM05D004443 ORTHO05D005421 1.1e-37 162.9 201 47.8
FAN27G0670 Fragaria x ananassa HOM05D004443 ORTHO05D005421 1.5e-37 162.5 250 42.8
Medtr3g072990 Medicago truncatula HOM05D004443 ORTHO05D005421 1.5e-37 162.5 143 59.4
PSO170G3840 Papaver somniferum HOM05D004443 ORTHO05D005421 1.5e-37 162.5 143 59.4
PGSC0003DMG401029032 Solanum tuberosum HOM05D004443 ORTHO05D005421 1.5e-37 162.5 244 43.4
Solyc11g013240.3 Solanum lycopersicum HOM05D004443 ORTHO05D005421 1.9e-37 162.2 244 43.0
Sopen11g008260 Solanum pennellii HOM05D004443 ORTHO05D005421 1.9e-37 162.2 244 43.0
FAN15G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 2.5e-37 161.8 242 43.8
CDE05G2151 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 3.3e-37 161.4 212 46.2
Gohir.D06G042700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 3.3e-37 161.4 175 50.9
unitig_747.g21486 Utricularia gibba HOM05D004443 ORTHO05D005421 4.3e-37 161.0 156 53.8
CAN.G392.3 Capsicum annuum HOM05D004443 ORTHO05D005421 5.7e-37 160.6 209 46.9
SGA_v2.0_scaffold24G10494 Striga asiatica HOM05D004443 ORTHO05D005421 5.7e-37 160.6 176 51.7
CARHR071230 Cardamine hirsuta HOM05D004443 ORTHO05D005421 7.4e-37 160.2 156 54.5
Lj4A601G4 Lonicera japonica HOM05D004443 ORTHO05D005421 7.4e-37 160.2 173 50.9
MBI03_g28297_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 7.4e-37 160.2 175 53.1
Sed0020608 Sechium edule HOM05D004443 ORTHO05D005421 7.4e-37 160.2 143 57.3
THA.LOC104813647 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 9.7e-37 159.8 221 46.6
EL10Ac1g00020 Beta vulgaris HOM05D004443 ORTHO05D005421 1.3e-36 159.5 175 52.0
Eucgr.F03751 Eucalyptus grandis HOM05D004443 ORTHO05D005421 1.3e-36 159.5 143 58.0
Gohir.D05G234800 Gossypium hirsutum HOM05D004443 ORTHO05D005421 1.3e-36 159.5 173 49.7
MD15G1356500 Malus domestica HOM05D004443 ORTHO05D005421 1.3e-36 159.5 179 49.7
Prupe.1G503700 Prunus persica HOM05D004443 ORTHO05D005421 1.3e-36 159.5 173 50.3
ATR0684G022 Amborella trichopoda HOM05D004443 ORTHO05D005421 1.6e-36 159.1 243 44.0
Cfa015975 Carpinus fangiana HOM05D004443 ORTHO05D005421 1.6e-36 159.1 173 50.3
Glyma.06G109800 Glycine max HOM05D004443 ORTHO05D005421 1.6e-36 159.1 143 58.7
Gorai.010G047900 Gossypium raimondii HOM05D004443 ORTHO05D005421 1.6e-36 159.1 175 50.3
Manes.02G160000 Manihot esculenta HOM05D004443 ORTHO05D005421 1.6e-36 159.1 244 40.6
AUR62004709 Chenopodium quinoa HOM05D004443 ORTHO05D005421 2.1e-36 158.7 180 51.1
Lj1g0001137 Lotus japonicus HOM05D004443 ORTHO05D005421 2.1e-36 158.7 173 51.4
Medtr5g059280 Medicago truncatula HOM05D004443 ORTHO05D005421 2.1e-36 158.7 210 45.7
ECA246G2537 Erigeron canadensis HOM05D004443 ORTHO05D005421 2.8e-36 158.3 164 51.2
FAN20G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 2.8e-36 158.3 242 43.4
Glyma.14G164400 Glycine max HOM05D004443 ORTHO05D005421 2.8e-36 158.3 212 48.1
Oeu047924.1 Olea europaea HOM05D004443 ORTHO05D005421 2.8e-36 158.3 173 50.3
Sabra02G0069100 Salix brachista HOM05D004443 ORTHO05D005421 2.8e-36 158.3 196 50.5
Atru.chr13.1339 Acer truncatum HOM05D004443 ORTHO05D005421 3.7e-36 157.9 190 48.4
Atru.chr13.1382 Acer truncatum HOM05D004443 ORTHO05D005421 3.7e-36 157.9 190 48.4
arahy.Tifrunner.gnm1.ann1.BQZ9WD Arachis hypogaea HOM05D004443 ORTHO05D005421 3.7e-36 157.9 215 46.0
arahy.Tifrunner.gnm1.ann1.ZN5JRL Arachis hypogaea HOM05D004443 ORTHO05D005421 3.7e-36 157.9 215 47.0
MELO3C003047.2 Cucumis melo HOM05D004443 ORTHO05D005421 3.7e-36 157.9 140 57.9
Thhalv10018161m.g Eutrema salsugineum HOM05D004443 ORTHO05D005421 3.7e-36 157.9 212 45.3
TAR376G1068 Trochodendron aralioides HOM05D004443 ORTHO05D005421 3.7e-36 157.9 210 46.7
Ciclev10000257m.g Citrus clementina HOM05D004443 ORTHO05D005421 4.8e-36 157.5 340 37.1
Glyma.04G252700 Glycine max HOM05D004443 ORTHO05D005421 4.8e-36 157.5 173 50.9
Os03g0704400 Oryza sativa ssp. japonica HOM05D004443 ORTHO05D005421 4.8e-36 157.5 163 54.6
Dinv27370 Davidia involucrata HOM05D004443 ORTHO05D005421 6.3e-36 157.1 208 43.8
Sabra05G0130800 Salix brachista HOM05D004443 ORTHO05D005421 6.3e-36 157.1 169 54.4
Actinidia29443 Actinidia chinensis HOM05D004443 ORTHO05D005421 8.2e-36 156.8 237 43.9
AL2G37950 Arabidopsis lyrata HOM05D004443 ORTHO05D005421 8.2e-36 156.8 226 43.8
BcaB02g07128 Brassica carinata HOM05D004443 ORTHO05D005421 8.2e-36 156.8 254 40.9
CSS0038352 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 8.2e-36 156.8 231 44.6
Carub.0002s2461 Capsella rubella HOM05D004443 ORTHO05D005421 8.2e-36 156.8 169 50.9
FAN24G3433 Fragaria x ananassa HOM05D004443 ORTHO05D005421 8.2e-36 156.8 227 43.6
Glyma.13G083100 Glycine max HOM05D004443 ORTHO05D005421 8.2e-36 156.8 197 49.2
Peaxi162Scf00339g00047 Petunia axillaris HOM05D004443 ORTHO05D005421 8.2e-36 156.8 241 42.3
Sp5g32890 Schrenkiella parvula HOM05D004443 ORTHO05D005421 8.2e-36 156.8 224 45.1
TAR628G1041 Trochodendron aralioides HOM05D004443 ORTHO05D005421 8.2e-36 156.8 213 46.0
GSVIVG01008926001 Vitis vinifera HOM05D004443 ORTHO05D005421 8.2e-36 156.8 203 47.3
Gohir.A05G232400 Gossypium hirsutum HOM05D004443 ORTHO05D005421 1.1e-35 156.4 173 48.6
Cpa.g.sc36.11 Carica papaya HOM05D004443 ORTHO05D005421 1.4e-35 156.0 173 50.3
Dinv07918 Davidia involucrata HOM05D004443 ORTHO05D005421 1.4e-35 156.0 173 49.7
Gorai.009G243100 Gossypium raimondii HOM05D004443 ORTHO05D005421 1.4e-35 156.0 173 49.1
Thecc.08G119500 Theobroma cacao HOM05D004443 ORTHO05D005421 1.4e-35 156.0 245 40.4
Aa31LG7G5960 Aethionema arabicum HOM05D004443 ORTHO05D005421 1.8e-35 155.6 224 45.1
Lsat_1_v5_gn_1_8300 Lactuca sativa HOM05D004443 ORTHO05D005421 1.8e-35 155.6 200 46.5
RcHm_v2.0_Chr6g0294911 Rosa chinensis HOM05D004443 ORTHO05D005421 1.8e-35 155.6 302 38.4
Hund27045 Selenicereus undatus HOM05D004443 ORTHO05D005421 1.8e-35 155.6 331 36.3
TWI56G1242 Tripterygium wilfordii HOM05D004443 ORTHO05D005421 1.8e-35 155.6 173 49.1
CSS0010068 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 2.4e-35 155.2 238 43.7
CSS0010818 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 2.4e-35 155.2 218 45.4
Gohir.A06G041700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 2.4e-35 155.2 247 41.7
Oeu030035.2 Olea europaea HOM05D004443 ORTHO05D005421 2.4e-35 155.2 173 50.3
QL09p036005 Quercus lobata HOM05D004443 ORTHO05D005421 2.4e-35 155.2 180 48.3
BraA07t31825Z Brassica rapa HOM05D004443 ORTHO05D005421 3.1e-35 154.8 247 42.1
Psat5g133680 Pisum sativum HOM05D004443 ORTHO05D005421 3.1e-35 154.8 168 51.8
PGR042G3639 Punica granatum HOM05D004443 ORTHO05D005421 3.1e-35 154.8 173 48.6
CSS0006777 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 5.3e-35 154.1 238 43.7
Migut.C01174 Erythranthe guttata HOM05D004443 ORTHO05D005421 5.3e-35 154.1 316 37.7
VMungo1309G0089 Vigna mungo HOM05D004443 ORTHO05D005421 5.3e-35 154.1 194 47.4
Phvul.009G121600 Phaseolus vulgaris HOM05D004443 ORTHO05D005421 6.9e-35 153.7 173 49.7
Psat2g079080 Pisum sativum HOM05D004443 ORTHO05D005421 9.0e-35 153.3 203 46.3
Potri.002G087600 Populus trichocarpa HOM05D004443 ORTHO05D005421 9.0e-35 153.3 243 42.4
A07p43040 Brassica napus HOM05D004443 ORTHO05D005421 1.2e-34 152.9 247 41.7
TPR.G22340 Trifolium pratense HOM05D004443 ORTHO05D005421 1.5e-34 152.5 217 45.6
Lsat_1_v5_gn_6_112781 Lactuca sativa HOM05D004443 ORTHO05D005421 2.6e-34 151.8 258 38.8
C06p30850 Brassica napus HOM05D004443 ORTHO05D005421 3.4e-34 151.4 222 45.0
SalBow7G4055 Salvia bowleyana HOM05D004443 ORTHO05D005421 3.4e-34 151.4 391 33.5
Cc10_g10510 Coffea canephora HOM05D004443 ORTHO05D005421 5.9e-34 150.6 251 41.4
Migut.N03312 Erythranthe guttata HOM05D004443 ORTHO05D005421 5.9e-34 150.6 237 42.6
SalBow7G0080 Salvia bowleyana HOM05D004443 ORTHO05D005421 5.9e-34 150.6 391 33.5
AT1G77720 Arabidopsis thaliana HOM05D004443 ORTHO05D005421 7.6e-34 150.2 308 38.3
Manes.18G073900 Manihot esculenta HOM05D004443 ORTHO05D005421 7.6e-34 150.2 244 41.0
THA.LOC104800183 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 7.6e-34 150.2 409 33.3
Lalb_Chr23g0270831 Lupinus albus HOM05D004443 ORTHO05D005421 1.7e-33 149.1 238 41.6
Lj4A595G17 Lonicera japonica HOM05D004443 ORTHO05D005421 2.2e-33 148.7 301 37.2
Lalb_Chr08g0241621 Lupinus albus HOM05D004443 ORTHO05D005421 2.2e-33 148.7 234 43.2
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.2e-33 148.7 211 44.5
HPP92_004123 Vanilla planifolia HOM05D004443 ORTHO05D005421 3.8e-33 147.9 214 45.3
CiPaw.05G227100 Carya illinoinensis HOM05D004443 ORTHO05D005421 6.5e-33 147.1 339 36.0
HanXRQChr04g0111641 Helianthus annuus HOM05D004443 ORTHO05D005421 6.5e-33 147.1 339 35.1
AUR62023626 Chenopodium quinoa HOM05D004443 ORTHO05D005421 8.5e-33 146.7 371 32.6
CsaV3_5G023250 Cucumis sativus L. HOM05D004443 ORTHO05D005421 8.5e-33 146.7 234 42.7
ClCG03G009370 Citrullus lanatus HOM05D004443 ORTHO05D005421 1.9e-32 145.6 233 41.2
Ca_15215_v3 Cicer arietinum L. HOM05D004443 ORTHO05D005421 2.5e-32 145.2 333 35.4
unitig_0.g2123 Utricularia gibba HOM05D004443 ORTHO05D005421 2.5e-32 145.2 290 38.6
SGA_v2.0_scaffold52G19007 Striga asiatica HOM05D004443 ORTHO05D005421 3.2e-32 144.8 189 45.0
Potri.005G173300 Populus trichocarpa HOM05D004443 ORTHO05D005421 4.2e-32 144.4 340 36.2
TPR.G8515 Trifolium pratense HOM05D004443 ORTHO05D005421 5.5e-32 144.1 334 34.1
COL.COLO4_38348 Corchorus olitorius HOM05D004443 ORTHO05D005421 7.2e-32 143.7 207 41.5
PSO017G0128 Papaver somniferum HOM05D004443 ORTHO05D005421 7.2e-32 143.7 223 42.2
Sc01g0001440 Simmondsia chinensis HOM05D004443 ORTHO05D005421 9.3e-32 143.3 400 32.5
Ah.05g172330 Amaranthus hybridus HOM05D004443 ORTHO05D005421 6.1e-31 140.6 413 32.0
C06p51690 Brassica napus HOM05D004443 ORTHO05D005421 9.7e-29 133.3 125 56.8
SEGI_02491 Sequoiadendron giganteum HOM05D004443 ORTHO05D005421 1.1e-27 129.8 700 28.1
Cre07.g341700 Chlamydomonas reinhardtii HOM05D004443 ORTHO05D005421 8.8e-22 110.2 157 40.1
Haze_00499 Corylus avellana HOM05D004443 ORTHO05D005421 2.0e-21 109.0 135 44.4
MCO15G651 Micromonas commoda HOM05D004443 ORTHO05D005421 1.3e-20 106.3 150 40.0
Phvul.008G166700 Phaseolus vulgaris HOM05D004443 ORTHO05D005421 2.8e-20 105.1 152 43.4
BcaB03g15927 Brassica carinata HOM05D004443 ORTHO05D005421 1.8e-19 102.4 111 52.3
CBR_g31292 Chara braunii HOM05D001539 ORTHO05D000937 6.9e-19 100.5 136 41.9
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 8.5e-17 93.6 278 30.2
Zm00001eb054400 Zea mays HOM05D004443 ORTHO05D005421 1.9e-16 92.4 218 35.3
PRCOL_00006669 Prasinoderma coloniale HOM05D004443 ORTHO05D005421 1.1e-13 83.2 111 45.0
vmacro12536 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 1.1e-08 66.6 144 34.0
Thecc.08G119100 Theobroma cacao HOM05D004443 ORTHO05D005421 3.2e-08 65.1 71 49.3
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 1.2e-07 63.2 75 45.3


User provided reference genes

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