Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-92 342.8 174 100.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 5.0e-51 204.9 146 70.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.2e-50 202.2 165 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.2e-43 179.5 136 63.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.5e-42 176.8 158 55.7
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.4e-24 117.1 134 47.0
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.8e-24 114.8 123 50.4
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 3.1e-21 105.9 142 40.8
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 3.1e-21 105.9 131 43.5
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.1e-21 105.5 131 42.7
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 9.2e-21 104.4 139 39.6
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.2e-20 104.0 143 38.5
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.7e-20 102.8 135 41.5
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 3.5e-20 102.4 135 38.5
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.5e-20 102.4 143 39.2
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.9e-20 101.7 135 39.3
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 5.9e-20 101.7 138 37.7
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 5.9e-20 101.7 135 39.3
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 5.9e-20 101.7 137 39.4
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 7.8e-20 101.3 134 40.3
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 7.8e-20 101.3 134 39.6
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 7.8e-20 101.3 144 37.5
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.0e-19 100.9 135 40.7
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.0e-19 100.9 144 39.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.0e-19 100.9 131 38.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.0e-19 100.9 143 37.8
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.3e-19 100.5 141 41.1
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.3e-19 100.5 131 38.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.3e-19 100.5 131 40.5
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.3e-19 100.5 138 37.7
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.7e-19 100.1 135 38.5
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.7e-19 100.1 134 39.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.7e-19 100.1 131 41.2
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.7e-19 100.1 131 41.2
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.7e-19 100.1 143 38.5
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 2.3e-19 99.8 135 37.8
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.3e-19 99.8 143 38.5
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 2.3e-19 99.8 135 40.0
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 2.9e-19 99.4 134 38.8
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.9e-19 99.4 135 37.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.9e-19 99.4 135 39.3
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.9e-19 99.4 135 37.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.9e-19 99.4 130 38.5
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 2.9e-19 99.4 139 40.3
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 3.8e-19 99.0 134 36.6
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.0e-19 98.6 136 38.2
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.0e-19 98.6 136 38.2
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 6.6e-19 98.2 134 38.8
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 6.6e-19 98.2 134 38.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 6.6e-19 98.2 134 38.8
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 6.6e-19 98.2 134 38.1
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 6.6e-19 98.2 134 36.6
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 8.6e-19 97.8 135 36.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 8.6e-19 97.8 135 37.8
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.6e-19 97.8 132 35.6
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 8.6e-19 97.8 134 38.8
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-18 97.4 134 38.1
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.1e-18 97.4 132 35.6
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.1e-18 97.4 132 35.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-18 97.1 140 37.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-18 97.1 140 37.1
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.5e-18 97.1 135 39.3
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.5e-18 97.1 132 40.2
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.5e-18 97.1 134 38.1
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.9e-18 96.7 140 37.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.9e-18 96.7 138 37.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.9e-18 96.7 131 39.7
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.5e-18 96.3 143 36.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.3e-18 95.9 131 39.7
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 3.3e-18 95.9 141 38.3
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 3.3e-18 95.9 135 39.3
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.3e-18 95.9 135 39.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 3.3e-18 95.9 131 36.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 3.3e-18 95.9 131 39.7
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.3e-18 95.5 131 41.2
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.3e-18 95.5 134 37.3
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.3e-18 95.5 134 37.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.3e-18 95.5 135 37.0
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 4.3e-18 95.5 135 39.3
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.6e-18 95.1 144 37.5
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 5.6e-18 95.1 135 36.3
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 5.6e-18 95.1 134 38.1
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.6e-18 95.1 144 33.3
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.6e-18 95.1 144 33.3
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.6e-18 95.1 143 35.0
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 7.3e-18 94.7 123 42.3
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 7.3e-18 94.7 135 36.3
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.3e-18 94.7 136 38.2
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 7.3e-18 94.7 139 38.1
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 9.5e-18 94.4 131 38.2
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 9.5e-18 94.4 131 38.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 9.5e-18 94.4 130 37.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.2e-17 94.0 136 36.8
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.2e-17 94.0 136 36.8
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.2e-17 94.0 131 38.2
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.2e-17 94.0 135 38.5
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.2e-17 94.0 139 38.1
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.6e-17 93.6 145 38.6
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.8e-17 92.8 108 42.6
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.8e-17 92.8 108 42.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.8e-17 92.8 138 34.8
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.8e-17 92.8 135 36.3
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 3.6e-17 92.4 139 37.4
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 3.6e-17 92.4 143 35.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.6e-17 92.4 144 34.7
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 4.7e-17 92.0 141 38.3
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.7e-17 92.0 110 43.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.7e-17 92.0 138 39.9
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 4.7e-17 92.0 135 37.8
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.1e-17 91.7 131 37.4
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 8.0e-17 91.3 143 35.0
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 8.0e-17 91.3 119 41.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.4e-16 90.5 143 35.0
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.4e-16 90.5 135 37.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.4e-16 90.5 131 35.9
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.8e-16 90.1 112 40.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.8e-16 90.1 143 34.3
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-16 90.1 121 39.7
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.3e-16 89.7 130 35.4
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 3.0e-16 89.4 113 41.6
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 3.0e-16 89.4 139 37.4
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.0e-16 89.4 118 39.8
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.9e-16 87.8 134 38.1
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 8.9e-16 87.8 150 34.0
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 8.9e-16 87.8 129 35.7
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 8.9e-16 87.8 116 37.9
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-15 87.4 124 39.5
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-15 87.0 139 33.8
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-15 87.0 130 36.2
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.6e-15 86.3 135 37.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.4e-15 85.9 139 32.4
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 4.4e-15 85.5 159 32.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 5.8e-15 85.1 130 33.8
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 5.8e-15 85.1 139 36.7
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 9.8e-15 84.3 130 34.6
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 9.8e-15 84.3 107 38.3
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.3e-14 84.0 113 37.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.7e-14 83.6 126 34.9
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.1e-13 80.9 123 37.4
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-13 80.5 113 35.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.8e-13 80.1 134 35.8
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.4e-13 79.7 94 43.6
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 5.4e-13 78.6 153 32.0
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 9.2e-13 77.8 126 35.7
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.2e-12 77.4 159 30.2
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.2e-12 77.4 143 32.9
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 7.8e-12 74.7 138 33.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 5.0e-11 72.0 115 36.5
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 6.6e-11 71.6 73 45.2
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 3.3e-10 69.3 73 43.8
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.6e-09 65.9 132 34.1
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.1e-08 64.3 109 33.9
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 4.4e-07 58.9 56 46.4
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 4.4e-07 58.9 80 38.8


User provided reference genes

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