Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 4534.2 2298 100.0
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1948.7 2427 47.2
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1733.8 2451 42.5
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1667.9 2319 42.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 1486.5 2339 39.9
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 1475.7 2379 39.3
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 1461.4 2372 39.7
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 1458.7 2375 39.4
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 1458.4 2409 38.8
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1456.8 2418 38.0
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 1450.3 2392 39.2
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 1439.1 2369 37.8
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1435.2 2402 38.8
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 1433.3 2387 38.9
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 1432.5 2351 39.6
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1431.4 2341 39.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 1430.2 2382 39.1
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 1425.6 2355 39.3
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1424.1 2396 38.6
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 1422.5 2379 39.0
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1420.6 2344 38.8
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1420.2 2373 38.2
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 1419.8 2372 38.6
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 1417.9 2393 38.2
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 1417.5 2336 38.7
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1413.3 2344 39.3
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1413.3 2343 39.5
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 1410.6 2396 38.6
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 1407.9 2372 38.5
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1406.0 2363 38.9
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 1401.7 2392 38.8
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1401.3 2355 38.2
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 1401.0 2394 38.5
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 1400.2 2356 38.3
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 1399.8 2369 38.2
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 1397.9 2358 38.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1397.1 2380 37.7
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 1396.7 2366 38.0
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1395.6 2376 37.6
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1394.4 2355 38.0
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 1393.6 2373 38.6
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 1393.3 2344 38.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1391.7 2383 38.6
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 1391.3 2346 38.1
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 1391.3 2357 38.1
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 1390.6 2356 38.2
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 1389.4 2369 38.5
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1385.2 2357 38.2
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1384.4 2386 38.4
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 1383.6 2346 38.2
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 1382.9 2349 37.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 1380.5 2372 38.3
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1377.1 2361 38.1
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 1376.7 2352 38.1
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 1374.0 2391 37.9
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 1372.8 2387 37.7
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1372.1 2380 37.3
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 1371.7 2365 38.7
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1370.5 2349 37.8
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 1369.8 2376 38.1
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1368.6 2367 37.3
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1366.7 2349 38.0
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 1364.0 2339 38.3
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1361.3 2355 38.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 1361.3 2355 38.0
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 1360.5 2356 37.9
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 1359.4 2379 38.2
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 1358.2 2382 38.1
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 1357.4 2378 37.7
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1354.3 2359 37.3
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 1354.3 2359 37.3
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 1353.6 2358 37.2
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1352.8 2377 37.1
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 1352.4 2339 38.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 1351.3 2375 37.3
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 1350.5 2364 37.6
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 1342.0 2338 37.3
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 1339.7 2362 37.6
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 1333.2 2349 36.9
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 1332.8 2353 37.2
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 1328.5 2359 36.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 0.0e+00 1321.6 3177 33.0
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 1310.8 2359 36.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1284.2 2389 36.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1271.9 2355 36.6
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1256.9 1948 40.6
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 1252.7 2163 37.7
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 1242.6 1894 41.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 1241.9 1903 41.1
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 1236.5 1888 41.5
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 1227.6 2391 35.7
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1198.3 1798 41.5
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1111.7 1769 40.1
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1108.6 2453 33.4
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 0.0e+00 1078.9 1355 47.6
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 6.3e-311 1072.0 1540 42.9
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 3.4e-272 943.3 1447 40.1
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 2.9e-247 860.5 1379 38.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 5.0e-215 753.4 1226 39.2
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 3.0e-212 744.2 1317 37.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.4e-201 708.0 1238 38.0
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.0e-200 704.9 1395 34.8
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.3e-191 675.6 1134 38.8
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 5.7e-187 660.2 2625 27.4
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.8e-173 614.8 1048 38.8
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 5.7e-171 607.1 1059 37.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.2e-129 468.4 795 37.7
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 7.9e-128 463.8 858 36.6
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 7.4e-118 430.6 872 34.5
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 6.5e-114 417.5 1112 31.0
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.8e-87 329.7 1006 29.4
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.1e-68 265.4 540 33.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 3.8e-58 232.3 286 47.2
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 6.8e-55 221.5 449 31.8
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 2.7e-35 156.4 390 29.0
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 7.8e-35 154.8 435 27.4
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-31 144.1 273 37.0
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.4e-30 139.0 153 47.1
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 7.6e-30 138.3 253 36.8
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 9.9e-30 137.9 143 49.0
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.3e-29 137.5 175 46.9
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 3.2e-28 132.9 262 32.8
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 5.1e-26 125.6 262 32.8
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 3.6e-24 119.4 95 61.1
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-21 110.5 156 40.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 8.7e-18 98.2 145 39.3
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 5.6e-17 95.5 161 34.8
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 5.3e-15 89.0 105 44.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.9e-13 83.2 311 25.1
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 6.4e-13 82.0 97 48.5
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 5.1e-10 72.4 92 43.5


User provided reference genes

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