Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 0.0e+00 1455.7 752 100.0
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.6e-237 825.9 831 55.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.0e-193 681.0 777 48.4
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.6e-189 666.4 748 48.3
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 2.6e-189 666.4 724 50.7
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 6.4e-188 661.8 783 46.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.1e-186 656.8 771 47.3
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.3e-185 654.1 757 48.1
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.3e-185 654.1 741 48.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 3.0e-185 652.9 762 47.9
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.9e-184 650.2 741 48.0
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 3.3e-184 649.4 759 47.6
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 9.6e-184 647.9 757 48.1
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 6.2e-183 645.2 739 47.6
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 8.1e-183 644.8 737 47.5
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.4e-182 644.0 734 48.4
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.4e-182 644.0 754 48.8
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.8e-182 643.7 734 48.1
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.8e-182 643.7 756 47.4
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 2.4e-182 643.3 752 47.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 3.1e-182 642.9 752 47.6
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.3e-182 642.1 763 46.5
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 9.0e-182 641.3 747 47.3
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 9.9e-181 637.9 746 47.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 9.9e-181 637.9 746 48.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 9.9e-181 637.9 749 46.3
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.7e-180 637.1 741 47.6
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.9e-180 636.3 741 47.1
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.9e-180 636.3 745 48.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.8e-180 636.0 745 48.3
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 3.8e-180 636.0 740 47.2
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 6.4e-180 635.2 742 47.3
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.1e-179 634.4 740 47.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 4.2e-179 632.5 801 46.8
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 7.1e-179 631.7 745 46.7
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.1e-178 630.2 746 47.2
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 7.9e-178 628.2 718 48.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 7.9e-178 628.2 781 45.8
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.3e-177 627.5 739 47.2
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.3e-177 627.5 743 47.4
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.8e-177 627.1 737 47.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.3e-177 626.7 767 46.2
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.3e-177 626.7 742 46.9
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 5.1e-177 625.5 743 46.2
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 6.7e-177 625.2 745 47.4
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 8.7e-177 624.8 748 46.4
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 8.7e-177 624.8 744 46.4
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.1e-176 624.4 746 46.1
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 9.6e-176 621.3 739 46.0
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.3e-175 620.9 730 46.0
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.1e-174 617.8 745 45.8
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.4e-174 616.7 769 45.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 3.1e-174 616.3 738 46.3
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 3.1e-174 616.3 754 44.3
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 2.0e-173 613.6 739 46.7
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.4e-173 612.8 737 46.4
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.2e-172 610.1 732 44.9
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.8e-172 609.4 749 45.0
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 8.4e-172 608.2 747 44.7
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.5e-171 606.7 733 46.2
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.6e-170 604.0 754 43.9
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.7e-170 603.2 724 45.9
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 4.6e-170 602.4 744 45.8
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 7.9e-170 601.7 796 44.5
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-169 601.3 767 45.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-169 600.9 746 44.8
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.8e-169 600.5 732 42.8
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 2.5e-168 596.7 737 42.9
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 4.3e-168 595.9 757 45.2
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.8e-167 593.2 771 45.0
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.8e-166 590.5 773 45.4
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 4.1e-166 589.3 749 44.7
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.0e-165 587.0 699 46.8
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 5.9e-165 585.5 752 44.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.1e-163 581.3 775 43.7
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.0e-161 574.7 689 45.6
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.9e-161 572.8 729 45.0
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.2e-159 567.0 725 42.2
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.4e-158 564.3 815 41.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 4.1e-158 562.8 737 41.5
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 9.1e-158 561.6 739 42.1
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.0e-156 558.1 740 41.4
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.3e-156 557.8 735 41.4
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.4e-155 554.3 742 42.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.4e-155 554.3 735 41.0
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 2.5e-155 553.5 725 41.5
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.4e-150 537.7 739 40.3
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 5.2e-145 519.2 736 41.3
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 3.7e-143 513.1 736 41.2
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 4.8e-143 512.7 771 38.3
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 1.8e-142 510.8 737 38.7
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.9e-140 503.4 923 37.3
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 4.0e-137 493.0 738 41.3
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.3e-135 488.0 427 56.0
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.5e-131 474.6 643 43.5
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 4.0e-129 466.5 602 42.9
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.8e-126 457.6 385 58.2
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 2.0e-125 454.1 688 39.0
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.0e-124 451.8 756 37.2
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.0e-124 451.8 756 37.2
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.0e-124 451.8 756 37.2
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.9e-124 450.3 607 42.3
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.9e-123 447.6 704 37.2
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.4e-118 430.6 569 47.1
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.6e-117 427.9 433 49.0
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.6e-117 427.9 543 45.5
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.5e-115 420.6 589 40.4
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 7.5e-104 382.5 604 39.1
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 7.8e-93 345.9 535 37.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 9.9e-88 328.9 503 41.7
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.4e-86 324.3 256 58.2
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 4.3e-83 313.5 487 39.8
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.5e-64 251.9 503 34.4
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 2.9e-55 221.1 190 52.1
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 2.5e-54 218.0 347 38.6
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.1e-41 174.5 159 53.5
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.1e-41 174.5 166 53.0
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 9.1e-41 172.9 196 48.5
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 9.1e-41 172.9 798 24.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-39 166.8 154 48.7
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.7e-37 160.6 139 54.0
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.0e-35 155.2 118 61.0
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 2.0e-35 155.2 139 51.8
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 4.1e-33 147.5 130 54.6
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 9.1e-33 146.4 135 55.6
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.0e-31 142.9 276 38.4
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.4e-28 132.5 113 59.3
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 2.3e-28 131.7 144 46.5
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 3.0e-28 131.3 546 25.6
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 9.1e-25 119.8 156 39.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 2.2e-23 115.2 86 59.3
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.1e-21 108.6 74 63.5
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 5.2e-20 104.0 341 28.2
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.9e-16 90.5 83 50.6
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 3.8e-15 87.8 103 43.7
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 5.0e-15 87.4 99 44.4
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.5e-14 85.1 107 37.4
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.8e-09 68.9 47 63.8
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-08 64.7 61 50.8


User provided reference genes

Program Settings