Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_27070 Physcomitrium patens HOM05D003666 ORTHO05D004770 5.9e-49 197.2 99 100.0
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 1.2e-25 119.8 97 69.1
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.7e-22 107.8 67 85.1
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.7e-22 107.8 67 85.1
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 2.3e-21 105.5 67 83.6
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 2.3e-21 105.5 67 83.6
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 2.3e-21 105.5 67 83.6
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 3.7e-19 98.2 67 80.6
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 3.7e-19 98.2 67 79.1
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 2.4e-18 95.5 67 77.6
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 7.0e-18 94.0 62 82.3
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.2e-17 93.2 67 77.6
Gohir.A08G104701 Gossypium hirsutum HOM05D003666 ORTHO05D004770 2.7e-17 92.0 62 80.6
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
C04p19570 Brassica napus HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 6.0e-17 90.9 62 80.6
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 1.0e-16 90.1 65 76.9
Solyc00g500171.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.0e-16 90.1 62 79.0
Solyc00g500188.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.0e-16 90.1 62 79.0
Solyc00g500252.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.0e-16 90.1 62 79.0
Sopen11g018260 Solanum pennellii HOM05D003666 ORTHO05D004770 1.0e-16 90.1 62 79.0
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 1.7e-16 89.4 70 74.3
arahy.Tifrunner.gnm1.ann1.75QRLF Arachis hypogaea HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
arahy.Tifrunner.gnm1.ann1.ZBC6LT Arachis hypogaea HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
FAN09G4889 Fragaria x ananassa HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
Lalb_Chr00c24g0407381 Lupinus albus HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
RcHm_v2.0_MTg0498681 Rosa chinensis HOM05D003666 ORTHO05D004770 3.9e-16 88.2 62 79.0
CiPaw.06G021600 Carya illinoinensis HOM05D003666 ORTHO05D004770 5.0e-16 87.8 62 79.0
unitig_87.g28022 Utricularia gibba HOM05D003666 ORTHO05D004770 6.6e-16 87.4 62 77.4
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 8.6e-16 87.0 67 73.1
Lalb_Chr00c54g0413591 Lupinus albus HOM05D003666 ORTHO05D004770 1.1e-15 86.7 61 78.7
Lalb_Chr02g0154061 Lupinus albus HOM05D003666 ORTHO05D004770 1.9e-15 85.9 62 77.4
Nitab4.5_0000085g0130 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.3e-15 85.1 62 74.2
SHI36046 Sapria himalayana HOM05D003666 ORTHO05D004770 5.6e-15 84.3 62 77.4
Potri.007G061881 Populus trichocarpa HOM05D003666 ORTHO05D004770 7.3e-15 84.0 62 77.4
SabraMtG0002200 Salix brachista HOM05D003666 ORTHO05D004770 7.3e-15 84.0 62 77.4
Lj2A1223T77 Lonicera japonica HOM05D003666 ORTHO05D004770 1.2e-14 83.2 62 75.8
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 1.2e-14 83.2 62 75.8
CiPaw.15G113100 Carya illinoinensis HOM05D003666 ORTHO05D004770 3.6e-14 81.6 62 72.6
FAN09G4847 Fragaria x ananassa HOM05D003666 ORTHO05D004770 8.1e-14 80.5 61 77.0
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 8.1e-14 80.5 63 71.4
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 1.1e-13 80.1 71 63.4
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 1.8e-13 79.3 58 75.9
FAN09G2550 Fragaria x ananassa HOM05D003666 ORTHO05D004770 2.3e-13 79.0 62 74.2
CDE02G3669 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 5.2e-13 77.8 58 75.9
Pp3c2_30660 Physcomitrium patens HOM05D003666 ORTHO05D004770 8.9e-13 77.0 47 87.2
Nn1g09957 Nelumbo nucifera HOM05D003666 ORTHO05D004770 5.8e-12 74.3 62 71.0
Nn1g09958 Nelumbo nucifera HOM05D003666 ORTHO05D004770 5.8e-12 74.3 62 71.0
Nn1g10168 Nelumbo nucifera HOM05D003666 ORTHO05D004770 5.8e-12 74.3 62 71.0
Dinv06696 Davidia involucrata HOM05D003666 ORTHO05D016272 1.3e-11 73.2 88 55.7
TAR626G0972 Trochodendron aralioides HOM05D003666 ORTHO05D004770 1.3e-11 73.2 58 74.1
SEGI_01871 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 2.4e-10 68.9 62 67.7
Nitab4.5_0000172g1330 Nicotiana tabacum HOM05D003666 ORTHO05D016272 9.2e-10 67.0 54 70.4
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 4.3e-07 58.2 62 51.6
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 9.5e-07 57.0 69 43.5


User provided reference genes

Program Settings