Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_26500 Physcomitrium patens HOM05D003256 ORTHO05D005659 2.4e-113 412.1 202 100.0
Pp3c5_5150 Physcomitrium patens HOM05D003256 ORTHO05D005659 1.6e-37 160.2 93 90.3
Pp3c6_22140 Physcomitrium patens HOM05D003256 ORTHO05D005659 9.9e-35 151.0 89 88.8
ECA238G0506 Erigeron canadensis HOM05D003256 ORTHO05D005659 1.7e-31 140.2 89 79.8
AagrBONN_evm.TU.Sc2ySwM_362.1456 Anthoceros agrestis HOM05D003256 ORTHO05D005659 3.0e-31 139.4 89 80.9
MD01G1146300 Malus domestica HOM05D003256 ORTHO05D005659 6.6e-31 138.3 84 83.3
HanXRQChr07g0202701 Helianthus annuus HOM05D003256 ORTHO05D005659 1.1e-30 137.5 84 83.3
Nitab4.5_0000369g0010 Nicotiana tabacum HOM05D003256 ORTHO05D005659 2.5e-30 136.3 92 77.2
Sopen05g031130 Solanum pennellii HOM05D003256 ORTHO05D005659 2.5e-30 136.3 84 82.1
MD07G1213200 Malus domestica HOM05D003256 ORTHO05D005659 3.3e-30 136.0 84 82.1
Nitab4.5_0015171g0010 Nicotiana tabacum HOM05D003256 ORTHO05D005659 3.3e-30 136.0 84 81.0
RcHm_v2.0_Chr1g0369301 Rosa chinensis HOM05D003256 ORTHO05D005659 3.3e-30 136.0 84 79.8
FvH4_3g15380 Fragaria vesca HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 81.0
FAN11G2434 Fragaria x ananassa HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 81.0
FAN16G1030 Fragaria x ananassa HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 81.0
FAN25G2279 Fragaria x ananassa HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 81.0
Lsat_1_v5_gn_2_122641 Lactuca sativa HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 82.1
MD10G1204900 Malus domestica HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 81.0
Oeu006655.1 Olea europaea HOM05D003256 ORTHO05D005659 4.3e-30 135.6 85 81.2
Prupe.4G136700 Prunus persica HOM05D003256 ORTHO05D005659 4.3e-30 135.6 84 81.0
SMO146G0041 Selaginella moellendorffii HOM05D003256 ORTHO05D005659 4.3e-30 135.6 89 78.7
CSS0038355 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 5.6e-30 135.2 84 81.0
CSS0041794 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 5.6e-30 135.2 84 81.0
HanXRQChr14g0459921 Helianthus annuus HOM05D003256 ORTHO05D005659 5.6e-30 135.2 83 81.9
Aa31LG10G10780 Aethionema arabicum HOM05D003256 ORTHO05D005659 7.3e-30 134.8 86 77.9
CSS0032234 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 7.3e-30 134.8 84 81.0
CSS0038881 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 7.3e-30 134.8 84 81.0
CAN.G1158.6 Capsicum annuum HOM05D003256 ORTHO05D005659 7.3e-30 134.8 84 81.0
Lj1C950T1 Lonicera japonica HOM05D003256 ORTHO05D005659 7.3e-30 134.8 84 79.8
Peaxi162Scf00957g00328 Petunia axillaris HOM05D003256 ORTHO05D005659 7.3e-30 134.8 84 81.0
Nitab4.5_0002100g0150 Nicotiana tabacum HOM05D003256 ORTHO05D005659 9.6e-30 134.4 84 79.8
Rhsim09G0171900 Rhododendron simsii HOM05D003256 ORTHO05D005659 9.6e-30 134.4 84 81.0
vmacro10065 Vaccinium macrocarpon HOM05D003256 ORTHO05D005659 9.6e-30 134.4 84 81.0
FAN01G1344 Fragaria x ananassa HOM05D003256 ORTHO05D005659 1.3e-29 134.0 90 75.6
FAN06G1448 Fragaria x ananassa HOM05D003256 ORTHO05D005659 1.3e-29 134.0 90 75.6
Oeu038996.2 Olea europaea HOM05D003256 ORTHO05D005659 1.3e-29 134.0 84 81.0
PGSC0003DMG400027125 Solanum tuberosum HOM05D003256 ORTHO05D005659 1.3e-29 134.0 84 81.0
Medtr3g070100 Medicago truncatula HOM05D003256 ORTHO05D005659 1.6e-29 133.7 84 79.8
RcHm_v2.0_Chr5g0025831 Rosa chinensis HOM05D003256 ORTHO05D005659 1.6e-29 133.7 84 79.8
TPR.G29802 Trifolium pratense HOM05D003256 ORTHO05D005659 1.6e-29 133.7 84 81.0
VMungo1383G2733 Vigna mungo HOM05D003256 ORTHO05D005659 1.6e-29 133.7 88 77.3
CiPaw.01G295400 Carya illinoinensis HOM05D003256 ORTHO05D005659 2.1e-29 133.3 84 78.6
Lalb_Chr15g0084341 Lupinus albus HOM05D003256 ORTHO05D005659 2.1e-29 133.3 84 81.0
Psat5g127280 Pisum sativum HOM05D003256 ORTHO05D005659 2.1e-29 133.3 84 81.0
Carub.0005s2258 Capsella rubella HOM05D003256 ORTHO05D005659 2.8e-29 132.9 93 73.1
DCAR_011785 Daucus carota HOM05D003256 ORTHO05D005659 2.8e-29 132.9 84 79.8
MD05G1223500 Malus domestica HOM05D003256 ORTHO05D005659 2.8e-29 132.9 84 78.6
Sed0004122 Sechium edule HOM05D003256 ORTHO05D005659 2.8e-29 132.9 84 78.6
Actinidia00932 Actinidia chinensis HOM05D003256 ORTHO05D005659 3.6e-29 132.5 84 79.8
Actinidia13915 Actinidia chinensis HOM05D003256 ORTHO05D005659 3.6e-29 132.5 84 79.8
ATR0564G033 Amborella trichopoda HOM05D003256 ORTHO05D005659 3.6e-29 132.5 92 76.1
BcaB01g00060 Brassica carinata HOM05D003256 ORTHO05D005659 3.6e-29 132.5 84 79.8
A04p04210 Brassica napus HOM05D003256 ORTHO05D005659 3.6e-29 132.5 84 79.8
A07p22680 Brassica napus HOM05D003256 ORTHO05D005659 3.6e-29 132.5 93 74.2
C06p23180 Brassica napus HOM05D003256 ORTHO05D005659 3.6e-29 132.5 97 72.2
BraA04t16137Z Brassica rapa HOM05D003256 ORTHO05D005659 3.6e-29 132.5 84 79.8
BraA07t29936Z Brassica rapa HOM05D003256 ORTHO05D005659 3.6e-29 132.5 93 74.2
BcaB02g08398 Brassica carinata HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 79.8
BcaC02g09791 Brassica carinata HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 79.8
A09p48800 Brassica napus HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 78.6
C04p36570 Brassica napus HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 79.8
BolC4t25140H Brassica oleracea HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 79.8
BraA09t40333Z Brassica rapa HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 78.6
CsaV3_5G008880 Cucumis sativus L. HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 77.4
Migut.F01436 Erythranthe guttata HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 78.6
FvH4_7g23960 Fragaria vesca HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 78.6
FAN03G3417 Fragaria x ananassa HOM05D003256 ORTHO05D005659 4.8e-29 132.1 84 78.6
Os04g0234600 Oryza sativa ssp. japonica HOM05D003256 ORTHO05D005659 4.8e-29 132.1 83 80.7
C08p31130 Brassica napus HOM05D003256 ORTHO05D005659 6.2e-29 131.7 84 78.6
BolC8t50734H Brassica oleracea HOM05D003256 ORTHO05D005659 6.2e-29 131.7 84 78.6
ClCG07G003920 Citrullus lanatus HOM05D003256 ORTHO05D005659 6.2e-29 131.7 84 77.4
Nitab4.5_0000278g0170 Nicotiana tabacum HOM05D003256 ORTHO05D005659 6.2e-29 131.7 84 79.8
Peaxi162Scf00401g00023 Petunia axillaris HOM05D003256 ORTHO05D005659 6.2e-29 131.7 84 78.6
Ciclev10031765m.g Citrus clementina HOM05D003256 ORTHO05D005659 8.1e-29 131.3 84 79.8
Mapoly0024s0048 Marchantia polymorpha HOM05D003256 ORTHO05D005659 8.1e-29 131.3 90 75.6
Phvul.001G240200 Phaseolus vulgaris HOM05D003256 ORTHO05D005659 8.1e-29 131.3 84 79.8
AL5G37090 Arabidopsis lyrata HOM05D003256 ORTHO05D005659 1.1e-28 131.0 173 51.4
AT3G55800 Arabidopsis thaliana HOM05D003256 ORTHO05D005659 1.1e-28 131.0 173 50.9
CARHR165910 Cardamine hirsuta HOM05D003256 ORTHO05D005659 1.1e-28 131.0 84 77.4
COL.COLO4_25669 Corchorus olitorius HOM05D003256 ORTHO05D005659 1.1e-28 131.0 84 78.6
Glyma.11G226900 Glycine max HOM05D003256 ORTHO05D005659 1.1e-28 131.0 84 78.6
unitig_52.g16837 Utricularia gibba HOM05D003256 ORTHO05D005659 1.1e-28 131.0 84 78.6
TWI73G0749 Tripterygium wilfordii HOM05D003256 ORTHO05D005659 1.4e-28 130.6 84 78.6
arahy.Tifrunner.gnm1.ann1.EZF9IN Arachis hypogaea HOM05D003256 ORTHO05D005659 1.8e-28 130.2 84 77.4
arahy.Tifrunner.gnm1.ann1.M6YT3U Arachis hypogaea HOM05D003256 ORTHO05D005659 1.8e-28 130.2 84 77.4
Thhalv10010434m.g Eutrema salsugineum HOM05D003256 ORTHO05D005659 1.8e-28 130.2 173 50.3
FAN21G0309 Fragaria x ananassa HOM05D003256 ORTHO05D005659 1.8e-28 130.2 77 83.1
Potri.008G063800 Populus trichocarpa HOM05D003256 ORTHO05D005659 1.8e-28 130.2 86 74.4
SGA_v2.0_scaffold343G49450 Striga asiatica HOM05D003256 ORTHO05D005659 2.4e-28 129.8 85 76.5
Sp5g06680 Schrenkiella parvula HOM05D003256 ORTHO05D005659 3.1e-28 129.4 173 50.3
MSTRG.8307 Avicennia marina HOM05D003256 ORTHO05D005659 4.0e-28 129.0 84 77.4
BolC6t37492H Brassica oleracea HOM05D003256 ORTHO05D005659 4.0e-28 129.0 93 73.1
MBI05_g03456_MAGBIO Magnolia biondii HOM05D003256 ORTHO05D005659 4.0e-28 129.0 84 77.4
Hund13828 Selenicereus undatus HOM05D003256 ORTHO05D005659 4.0e-28 129.0 84 77.4
TAR623G1127 Trochodendron aralioides HOM05D003256 ORTHO05D005659 4.0e-28 129.0 85 76.5
GSVIVG01016373001 Vitis vinifera HOM05D003256 ORTHO05D005659 4.0e-28 129.0 84 77.4
Ca_17142_v3 Cicer arietinum L. HOM05D003256 ORTHO05D005659 5.3e-28 128.6 84 77.4
Aqoxy1G00711 Aquilegia oxysepala HOM05D003256 ORTHO05D005659 6.9e-28 128.3 84 76.2
CDE02G1261 Ceratophyllum demersum HOM05D003256 ORTHO05D005659 6.9e-28 128.3 84 76.2
CDE04G0991 Ceratophyllum demersum HOM05D003256 ORTHO05D005659 6.9e-28 128.3 84 76.2
Eucgr.J00242 Eucalyptus grandis HOM05D003256 ORTHO05D005659 6.9e-28 128.3 84 75.0
Glyma.18G030400 Glycine max HOM05D003256 ORTHO05D005659 6.9e-28 128.3 84 77.4
Nn2g11368 Nelumbo nucifera HOM05D003256 ORTHO05D005659 6.9e-28 128.3 84 77.4
Zm00001eb147750 Zea mays HOM05D003256 ORTHO05D005659 6.9e-28 128.3 89 73.0
Duzib106G0685 Durio zibethinus HOM05D003256 ORTHO05D005659 9.0e-28 127.9 84 77.4
PGR142G2386 Punica granatum HOM05D003256 ORTHO05D005659 9.0e-28 127.9 84 77.4
unitig_62.g23937 Utricularia gibba HOM05D003256 ORTHO05D005659 9.0e-28 127.9 84 76.2
Cfa001372 Carpinus fangiana HOM05D003256 ORTHO05D005659 1.2e-27 127.5 84 76.2
Haze_17178 Corylus avellana HOM05D003256 ORTHO05D005659 1.2e-27 127.5 84 76.2
Potri.010G193300 Populus trichocarpa HOM05D003256 ORTHO05D005659 1.2e-27 127.5 86 73.3
Sabra08G0047000 Salix brachista HOM05D003256 ORTHO05D005659 1.2e-27 127.5 86 73.3
SalBow6G0602 Salvia bowleyana HOM05D003256 ORTHO05D005659 1.2e-27 127.5 84 76.2
SalBow6G6740 Salvia bowleyana HOM05D003256 ORTHO05D005659 1.2e-27 127.5 84 76.2
EL10Ac2g04782 Beta vulgaris HOM05D003256 ORTHO05D005659 1.5e-27 127.1 84 76.2
CANSAT80G0910 Cannabis sativa HOM05D003256 ORTHO05D005659 1.5e-27 127.1 92 70.7
THA.LOC104824303 Tarenaya hassleriana HOM05D003256 ORTHO05D005659 1.5e-27 127.1 86 74.4
Ah.16g103070 Amaranthus hybridus HOM05D003256 ORTHO05D005659 2.0e-27 126.7 84 76.2
MELO3C025149.2 Cucumis melo HOM05D003256 ORTHO05D005659 2.0e-27 126.7 77 79.2
Gohir.A10G229000 Gossypium hirsutum HOM05D003256 ORTHO05D005659 2.0e-27 126.7 92 69.6
Gohir.D10G243000 Gossypium hirsutum HOM05D003256 ORTHO05D005659 2.0e-27 126.7 92 69.6
Cc02_g06960 Coffea canephora HOM05D003256 ORTHO05D005659 2.6e-27 126.3 84 76.2
Duzib114G1030 Durio zibethinus HOM05D003256 ORTHO05D005659 2.6e-27 126.3 84 76.2
HPP92_015300 Vanilla planifolia HOM05D003256 ORTHO05D005659 2.6e-27 126.3 84 77.4
Atru.chr12.249 Acer truncatum HOM05D003256 ORTHO05D005659 3.4e-27 125.9 84 76.2
Cpa.g.sc19.221 Carica papaya HOM05D003256 ORTHO05D005659 4.5e-27 125.6 84 76.2
Manes.07G124800 Manihot esculenta HOM05D003256 ORTHO05D005659 4.5e-27 125.6 84 76.2
BcaC08g44753 Brassica carinata HOM05D003256 ORTHO05D005659 7.6e-27 124.8 100 68.0
Sed0001843 Sechium edule HOM05D003256 ORTHO05D005659 7.6e-27 124.8 84 73.8
Thecc.10G027000 Theobroma cacao HOM05D003256 ORTHO05D005659 7.6e-27 124.8 84 75.0
Gorai.011G279400 Gossypium raimondii HOM05D003256 ORTHO05D005659 9.9e-27 124.4 92 68.5
HPP92_015335 Vanilla planifolia HOM05D003256 ORTHO05D005659 9.9e-27 124.4 84 76.2
Lj6g0015506 Lotus japonicus HOM05D003256 ORTHO05D005659 1.7e-26 123.6 84 75.0
PSO339G4197 Papaver somniferum HOM05D003256 ORTHO05D005659 2.9e-26 122.9 93 68.8
PSO801G0459 Papaver somniferum HOM05D003256 ORTHO05D005659 2.9e-26 122.9 93 68.8
Sc11g0007310 Simmondsia chinensis HOM05D003256 ORTHO05D005659 2.9e-26 122.9 84 73.8
Manes.10G018100 Manihot esculenta HOM05D003256 ORTHO05D005659 6.4e-26 121.7 84 73.8
AUR62012202 Chenopodium quinoa HOM05D003256 ORTHO05D005659 4.2e-25 119.0 84 72.6
AUR62022835 Chenopodium quinoa HOM05D003256 ORTHO05D005659 4.2e-25 119.0 84 72.6
CBR_g48544 Chara braunii HOM05D003256 ORTHO05D005659 1.3e-21 107.5 93 61.3
BcaB02g07674 Brassica carinata HOM05D003256 ORTHO05D005659 7.6e-19 98.2 85 62.4
Cre03.g185550 Chlamydomonas reinhardtii HOM05D003256 ORTHO05D005659 1.1e-17 94.4 77 66.2
CARHR292640 Cardamine hirsuta HOM05D003256 ORTHO05D005659 6.7e-15 85.1 57 70.2
MCO15G625 Micromonas commoda HOM05D003256 ORTHO05D005659 3.8e-10 69.3 72 51.4
PRCOL_00004449 Prasinoderma coloniale HOM05D003256 ORTHO05D005659 7.1e-09 65.1 72 47.2
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 2.7e-08 63.2 60 53.3
Cre17.g699600 Chlamydomonas reinhardtii HOM05D003256 ORTHO05D005659 1.5e-06 57.4 76 44.7


User provided reference genes

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