Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.5e-34 149.1 78 100.0
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.2e-31 139.4 78 92.3
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 65.4
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 62.8
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 62.8
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 3.8e-19 97.8 78 62.8
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 1.1e-18 96.3 78 60.3
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.5e-18 95.9 78 64.1
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.5e-18 95.9 78 64.1
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.9e-18 95.5 78 59.0
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.2e-18 94.4 78 62.8
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 5.5e-18 94.0 78 60.3
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 7.2e-18 93.6 78 59.0
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 9.5e-18 93.2 78 61.5
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 9.5e-18 93.2 78 61.5
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 59.0
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 59.0
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 1.6e-17 92.4 78 61.5
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 61.5
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 57.7
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 61.5
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 60.3
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 59.0
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 60.3
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 60.3
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 60.3
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 6.1e-17 90.5 78 59.0
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 6.1e-17 90.5 78 59.0
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 6.1e-17 90.5 78 60.3
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 59.0
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 59.0
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 57.7
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 60.3
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 57.7
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 57.7
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 57.7
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 57.7
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.3e-16 88.6 78 59.0
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.0e-16 88.2 78 59.0
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 3.0e-16 88.2 79 60.8
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.0e-16 88.2 78 57.7
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 4.0e-16 87.8 78 56.4
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.2e-16 87.4 73 60.3
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 5.2e-16 87.4 78 59.0
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 6.8e-16 87.0 74 56.8
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 8.9e-16 86.7 76 56.6
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 56.4
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 55.1
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.5e-15 85.9 78 57.7
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.5e-15 85.9 79 54.4
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.5e-15 85.9 78 57.7
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 1.5e-15 85.9 78 56.4
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 2.0e-15 85.5 77 57.1
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.0e-15 85.5 78 56.4
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 2.0e-15 85.5 78 56.4
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 2.6e-15 85.1 78 57.7
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 3.4e-15 84.7 76 57.9
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 3.4e-15 84.7 78 55.1
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 4.4e-15 84.3 78 53.8
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 4.4e-15 84.3 77 53.2
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 5.7e-15 84.0 78 55.1
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 7.5e-15 83.6 77 54.5
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 7.5e-15 83.6 78 55.1
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 7.5e-15 83.6 78 53.8
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 9.8e-15 83.2 78 55.1
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.3e-14 82.8 78 56.4
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 1.7e-14 82.4 78 55.1
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.7e-14 82.4 78 55.1
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 1.7e-14 82.4 78 55.1
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.7e-14 82.4 78 53.8
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 2.2e-14 82.0 78 52.6
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.9e-14 81.6 78 52.6
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.9e-14 81.6 78 52.6
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 2.9e-14 81.6 78 52.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 3.7e-14 81.3 78 52.6
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 4.9e-14 80.9 78 56.4
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 4.9e-14 80.9 79 54.4
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 6.3e-14 80.5 78 53.8
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 6.3e-14 80.5 78 53.8
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.3e-14 80.5 78 55.1
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.3e-14 80.5 78 53.8
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 6.3e-14 80.5 78 52.6
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 8.3e-14 80.1 78 52.6
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 8.3e-14 80.1 79 53.2
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.1e-13 79.7 79 53.2
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 1.1e-13 79.7 78 55.1
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.4e-13 79.3 79 54.4
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.8e-13 79.0 79 53.2
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.8e-13 79.0 79 53.2
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.8e-13 79.0 79 53.2
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.8e-13 79.0 79 53.2
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.8e-13 79.0 79 53.2
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.8e-13 79.0 79 53.2
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 55.1
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 52.6
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 51.3
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 53.8
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 59.0
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 51.3
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.8e-13 79.0 79 53.2
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.8e-13 79.0 78 51.3
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 2.4e-13 78.6 78 51.3
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 3.2e-13 78.2 79 53.2
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.2e-13 78.2 78 52.6
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 3.2e-13 78.2 78 50.0
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 3.2e-13 78.2 78 53.8
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 3.2e-13 78.2 78 53.8
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.2e-13 78.2 78 52.6
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 4.1e-13 77.8 79 50.6
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 5.4e-13 77.4 79 53.2
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 5.4e-13 77.4 79 53.2
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 5.4e-13 77.4 79 53.2
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.4e-13 77.4 79 53.2
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 5.4e-13 77.4 78 55.1
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.4e-13 77.4 78 52.6
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 7.0e-13 77.0 78 50.0
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 7.0e-13 77.0 79 51.9
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 7.0e-13 77.0 78 53.8
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 7.0e-13 77.0 78 51.3
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 7.0e-13 77.0 78 52.6
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 7.0e-13 77.0 76 52.6
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 7.0e-13 77.0 82 53.7
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 7.0e-13 77.0 77 50.6
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 7.0e-13 77.0 78 52.6
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 9.2e-13 76.6 78 53.8
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 9.2e-13 76.6 78 52.6
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 9.2e-13 76.6 78 51.3
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 9.2e-13 76.6 78 50.0
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.2e-12 76.3 78 52.6
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.2e-12 76.3 77 50.6
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 1.2e-12 76.3 78 52.6
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 1.2e-12 76.3 78 52.6
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.2e-12 76.3 78 53.8
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.2e-12 76.3 74 50.0
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.2e-12 76.3 78 48.7
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.6e-12 75.9 78 50.0
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.6e-12 75.9 75 48.0
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.6e-12 75.9 78 52.6
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.6e-12 75.9 78 51.3
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.0e-12 75.5 79 51.9
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 2.0e-12 75.5 79 50.6
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 2.0e-12 75.5 79 50.6
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.0e-12 75.5 78 50.0
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.5e-12 74.7 79 50.6
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.5e-12 74.7 80 53.8
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.5e-12 74.7 79 49.4
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.5e-12 74.7 78 52.6
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.5e-12 74.7 75 49.3
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 5.9e-12 73.9 79 50.6
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 5.9e-12 73.9 78 51.3
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.8e-12 73.6 78 50.0
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 7.8e-12 73.6 78 50.0
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.0e-11 73.2 78 48.7
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 1.0e-11 73.2 78 47.4
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.0e-11 73.2 72 54.2
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.7e-11 72.4 70 51.4
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.1e-10 69.7 80 48.8
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 1.9e-10 68.9 78 50.0
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 2.5e-10 68.6 79 46.8
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.5e-10 68.6 78 48.7
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 3.3e-10 68.2 57 57.9
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 3.3e-10 68.2 80 48.8
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.3e-10 67.8 63 57.1
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 5.6e-10 67.4 62 56.5
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 1.2e-09 66.2 51 58.8
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.2e-09 66.2 79 45.6
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 8.9e-08 60.1 68 45.6
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 1.2e-07 59.7 78 44.9
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.2e-07 59.7 64 46.9
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.2e-06 55.5 58 48.3
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 6.4e-06 53.9 49 51.0


User provided reference genes

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