Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 0.0e+00 3040.4 1565 100.0
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 2.8e-270 936.4 1567 39.8
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 3.2e-258 896.3 1708 36.9
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 1.4e-213 748.0 1620 33.5
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 2.2e-206 724.2 1579 33.3
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.1e-205 721.8 1261 37.4
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.1e-205 719.9 1666 33.3
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 1.1e-200 705.3 1631 32.2
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 4.0e-200 703.4 1635 32.5
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 1.7e-198 698.0 1682 31.9
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 2.4e-197 694.1 1614 32.7
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 4.2e-197 693.3 1628 32.2
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 1.7e-195 688.0 1612 32.0
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 5.1e-195 686.4 1626 32.1
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 8.7e-195 685.6 1589 32.4
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 1.9e-194 684.5 1655 32.0
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 4.3e-194 683.3 1575 31.7
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 5.6e-194 682.9 1639 31.7
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 2.1e-193 681.0 1660 30.7
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 2.1e-193 681.0 1667 31.4
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 6.2e-193 679.5 1616 32.5
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 1.4e-192 678.3 1657 31.9
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 1.8e-192 677.9 1590 32.5
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 2.4e-192 677.6 1588 32.0
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 3.1e-192 677.2 1662 31.7
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 1.2e-191 675.2 1595 32.8
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 5.8e-191 672.9 1595 32.4
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 7.6e-191 672.5 1605 31.8
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 2.2e-190 671.0 1635 30.7
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 6.4e-190 669.5 1659 30.7
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 1.9e-189 667.9 1588 33.1
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 1.9e-189 667.9 1635 30.7
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 2.4e-189 667.5 1594 31.6
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 2.4e-189 667.5 1613 31.1
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 5.4e-189 666.4 1586 32.7
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 1.6e-188 664.8 1610 31.7
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 2.1e-188 664.5 1590 31.1
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.1e-188 664.5 1589 32.5
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 3.5e-188 663.7 1633 31.6
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 1.0e-187 662.1 1581 31.5
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 5.1e-187 659.8 1725 30.6
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 3.3e-186 657.1 1595 32.1
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 7.3e-186 656.0 1589 32.6
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 7.3e-186 656.0 1413 33.8
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 7.3e-186 656.0 1605 30.7
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 7.3e-186 656.0 1658 31.4
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 9.6e-186 655.6 1597 31.6
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 8.1e-185 652.5 1639 30.3
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 1.1e-184 652.1 1652 30.9
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 1.4e-184 651.7 1645 30.7
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 1.8e-184 651.4 1645 31.8
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 2.0e-183 647.9 1597 31.6
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 4.5e-183 646.7 1599 30.9
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 4.5e-183 646.7 1617 30.3
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 1.3e-182 645.2 1607 30.7
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 2.2e-182 644.4 1654 30.0
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 3.8e-182 643.7 1652 30.9
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 3.8e-182 643.7 1603 31.8
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 1.1e-181 642.1 1650 30.8
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 7.1e-181 639.4 1616 30.0
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 7.1e-181 639.4 1262 33.8
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 9.3e-181 639.0 1608 30.3
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 4.6e-180 636.7 1610 31.1
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 1.0e-179 635.6 1551 31.3
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 2.3e-179 634.4 1623 30.6
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 2.3e-179 634.4 1664 31.2
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 5.1e-179 633.3 1571 30.7
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 1.1e-178 632.1 1664 30.3
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 1.9e-178 631.3 1265 33.2
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 7.4e-178 629.4 1621 31.0
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 7.4e-178 629.4 1392 31.8
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 2.8e-177 627.5 1652 30.3
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 4.8e-177 626.7 1592 30.9
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 4.5e-175 620.2 1600 30.7
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 1.4e-173 615.1 1624 30.2
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 3.2e-173 614.0 1612 30.0
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 7.1e-173 612.8 1406 32.7
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 1.8e-171 608.2 1549 31.2
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 2.3e-171 607.8 1602 31.1
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 1.5e-170 605.1 1399 31.8
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 5.6e-170 603.2 1672 29.3
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 9.6e-170 602.4 1642 30.0
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.8e-168 598.2 1706 29.6
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 5.3e-168 596.7 1627 29.3
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 2.0e-167 594.7 1589 30.6
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 2.6e-167 594.3 1465 31.6
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 8.4e-166 589.3 1578 30.6
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 2.7e-164 584.3 1515 29.8
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 2.5e-162 577.8 1373 31.8
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 2.2e-161 574.7 1378 31.8
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 3.7e-161 573.9 1376 31.8
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 3.7e-161 573.9 1544 32.6
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 2.0e-159 568.2 1499 31.0
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 3.4e-159 567.4 1380 31.4
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 1.9e-157 561.6 1347 32.4
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 2.3e-155 554.7 1566 29.6
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 3.2e-141 507.7 1115 31.6
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 9.4e-133 479.6 1571 27.5
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.6e-130 471.5 1038 31.9
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.4e-128 464.9 908 34.0
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.0e-123 449.5 998 31.8
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.0e-118 433.0 1621 26.5
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.3e-118 431.8 966 32.2
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 8.9e-83 313.5 689 34.1
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 4.9e-81 307.8 813 30.3
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 3.2e-80 305.1 789 30.5
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 2.1e-79 302.4 779 29.3
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 2.8e-68 265.4 938 29.2
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 2.0e-66 259.2 581 31.8
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 2.7e-63 248.8 826 26.9
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 1.0e-62 246.9 739 27.7
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.2e-55 223.4 625 31.7
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 4.5e-50 204.9 629 28.0
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.3e-49 203.4 402 33.3
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.3e-46 192.6 527 30.4
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 1.3e-44 186.8 573 28.4
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 6.1e-39 167.9 295 33.2
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 2.2e-33 149.4 477 27.7
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 4.4e-29 135.2 198 39.4
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.7e-28 133.3 128 52.3
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.7e-28 133.3 419 28.4
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 4.2e-24 118.6 123 48.0
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 4.4e-21 108.6 1449 20.8
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 1.2e-15 90.5 94 47.9
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 6.1e-15 88.2 125 40.8
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.5e-13 83.6 195 31.3
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 3.7e-12 79.0 285 28.4
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-11 77.0 156 29.5
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 1.8e-11 76.6 397 24.2
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.9e-10 71.6 175 29.1
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.7e-10 71.2 176 31.2
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.0e-09 70.9 363 25.6
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.9e-09 69.3 176 30.7
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 3.8e-09 68.9 290 24.8
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 1.9e-08 66.6 129 32.6
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-08 66.6 176 29.5
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.2e-08 64.7 176 29.0
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.7e-07 62.8 186 27.4
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 8.0e-07 61.2 124 28.2


User provided reference genes

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