Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_24770 Physcomitrium patens HOM05D007729 ORTHO05D009724 0.0e+00 1288.5 681 100.0
Pp3c5_5230 Physcomitrium patens HOM05D007729 ORTHO05D009724 2.4e-306 1055.0 681 81.6
Pp3c27_4900 Physcomitrium patens HOM05D007729 ORTHO05D009724 2.0e-225 786.2 567 75.1
SEGI_22290 Sequoiadendron giganteum HOM05D007729 ORTHO05D009724 2.4e-149 533.5 572 52.3
PRCOL_00006313 Prasinoderma coloniale HOM05D007729 ORTHO05D009724 1.0e-112 411.8 626 40.3
Nn4g25665 Nelumbo nucifera HOM05D007729 ORTHO05D009724 8.3e-102 375.6 557 41.8
TAR365G0479 Trochodendron aralioides HOM05D007729 ORTHO05D009724 4.1e-101 373.2 559 41.7
PSO761G0658 Papaver somniferum HOM05D007729 ORTHO05D009724 5.2e-96 356.3 558 40.3
Dinv24421 Davidia involucrata HOM05D007729 ORTHO05D009724 9.9e-95 352.1 557 39.5
PSO210G3025 Papaver somniferum HOM05D007729 ORTHO05D009724 4.1e-93 346.7 555 38.2
RcHm_v2.0_Chr3g0456781 Rosa chinensis HOM05D007729 ORTHO05D009724 7.1e-93 345.9 575 38.4
Ciclev10000704m.g Citrus clementina HOM05D007729 ORTHO05D009724 9.2e-93 345.5 552 38.4
CDE12G0453 Ceratophyllum demersum HOM05D007729 ORTHO05D009724 2.7e-92 344.0 505 40.6
ATR0706G084 Amborella trichopoda HOM05D007729 ORTHO05D009724 3.5e-92 343.6 556 39.6
GSVIVG01031211001 Vitis vinifera HOM05D007729 ORTHO05D009724 1.7e-91 341.3 565 38.4
FvH4_6g07160 Fragaria vesca HOM05D007729 ORTHO05D009724 3.9e-91 340.1 497 41.4
Carub.0001s0852 Capsella rubella HOM05D007729 ORTHO05D009724 5.1e-91 339.7 558 38.9
Nitab4.5_0000368g0330 Nicotiana tabacum HOM05D007729 ORTHO05D009724 5.1e-91 339.7 564 38.8
CANSAT54G0579 Cannabis sativa HOM05D007729 ORTHO05D009724 1.1e-90 338.6 561 39.6
Lj9A208G24 Lonicera japonica HOM05D007729 ORTHO05D009724 1.1e-90 338.6 491 41.8
THA.LOC104805912 Tarenaya hassleriana HOM05D007729 ORTHO05D009724 1.1e-90 338.6 555 38.0
Hma1.2p1_1320F.1_g275420 Hydrangea macrophylla HOM05D007729 ORTHO05D009724 2.5e-90 337.4 524 40.5
QL03p018088 Quercus lobata HOM05D007729 ORTHO05D009724 2.5e-90 337.4 556 38.5
CAN.G1273.5 Capsicum annuum HOM05D007729 ORTHO05D009724 4.3e-90 336.7 580 39.3
MBI18_g24956_MAGBIO Magnolia biondii HOM05D007729 ORTHO05D009724 4.3e-90 336.7 563 37.1
FAN14G4369 Fragaria x ananassa HOM05D007729 ORTHO05D009724 7.3e-90 335.9 501 41.1
Solyc01g100260.4 Solanum lycopersicum HOM05D007729 ORTHO05D009724 1.6e-89 334.7 566 39.6
Sopen01g043770 Solanum pennellii HOM05D007729 ORTHO05D009724 1.8e-88 331.3 566 39.2
Manes.09G175100 Manihot esculenta HOM05D007729 ORTHO05D009724 4.0e-88 330.1 564 37.9
PGSC0003DMG400024735 Solanum tuberosum HOM05D007729 ORTHO05D009724 4.0e-88 330.1 573 39.3
Sp1g07780 Schrenkiella parvula HOM05D007729 ORTHO05D009724 8.9e-88 328.9 577 37.4
FAN05G4184 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.2e-87 328.6 501 40.7
Lsat_1_v5_gn_7_73440 Lactuca sativa HOM05D007729 ORTHO05D009724 1.2e-87 328.6 559 37.0
Peaxi162Scf00673g00025 Petunia axillaris HOM05D007729 ORTHO05D009724 1.2e-87 328.6 529 38.9
Cpa.g.sc48.137 Carica papaya HOM05D007729 ORTHO05D009724 5.8e-87 326.2 495 41.4
FAN09G4655 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.3e-86 325.1 510 40.4
Potri.005G020100 Populus trichocarpa HOM05D007729 ORTHO05D009724 3.8e-86 323.6 555 36.9
Thecc.05G320400 Theobroma cacao HOM05D007729 ORTHO05D009724 3.8e-86 323.6 552 37.9
BraA08t35386Z Brassica rapa HOM05D007729 ORTHO05D009724 4.9e-86 323.2 546 38.5
Lalb_Chr02g0147931 Lupinus albus HOM05D007729 ORTHO05D009724 4.9e-86 323.2 505 39.6
A08p34750 Brassica napus HOM05D007729 ORTHO05D009724 1.1e-85 322.0 546 38.3
AL1G19670 Arabidopsis lyrata HOM05D007729 ORTHO05D009724 1.9e-85 321.2 561 38.0
MSTRG.20396 Avicennia marina HOM05D007729 ORTHO05D009724 1.9e-85 321.2 567 37.7
C08p12530 Brassica napus HOM05D007729 ORTHO05D009724 2.4e-85 320.9 555 37.5
Gohir.D13G114300 Gossypium hirsutum HOM05D007729 ORTHO05D009724 7.1e-85 319.3 559 37.6
TWI56G1038 Tripterygium wilfordii HOM05D007729 ORTHO05D009724 9.3e-85 318.9 469 40.9
Sabra05G0026100 Salix brachista HOM05D005361 ORTHO05D006518 1.2e-84 318.5 509 37.5
BolC8t48891H Brassica oleracea HOM05D007729 ORTHO05D009724 1.6e-84 318.2 511 39.3
Duzib177G0448 Durio zibethinus HOM05D007729 ORTHO05D009724 1.6e-84 318.2 576 37.5
Gorai.013G128200 Gossypium raimondii HOM05D007729 ORTHO05D009724 2.1e-84 317.8 555 37.7
SalBow7G3736 Salvia bowleyana HOM05D007729 ORTHO05D009724 3.5e-84 317.0 568 37.3
Aa31LG1G6090 Aethionema arabicum HOM05D007729 ORTHO05D009724 4.6e-84 316.6 511 39.9
Thhalv10007209m.g Eutrema salsugineum HOM05D007729 ORTHO05D009724 4.6e-84 316.6 603 36.5
Nitab4.5_0006072g0050 Nicotiana tabacum HOM05D007729 ORTHO05D009724 4.6e-84 316.6 584 36.8
PGR031G2787 Punica granatum HOM05D007729 ORTHO05D009724 6.0e-84 316.2 564 38.1
Atru.chr2.143 Acer truncatum HOM05D007729 ORTHO05D009724 7.8e-84 315.8 577 36.4
HanXRQChr09g0268291 Helianthus annuus HOM05D007729 ORTHO05D009724 1.0e-83 315.5 551 36.1
AT1G09195 Arabidopsis thaliana HOM05D007729 ORTHO05D009724 1.3e-83 315.1 505 40.2
COL.COLO4_04132 Corchorus olitorius HOM05D007729 ORTHO05D009724 2.3e-83 314.3 548 38.0
Gohir.A13G111500 Gossypium hirsutum HOM05D007729 ORTHO05D009724 3.0e-83 313.9 554 37.2
Cc02_g34750 Coffea canephora HOM05D007729 ORTHO05D009724 8.7e-83 312.4 580 36.0
ECA236G3528 Erigeron canadensis HOM05D007729 ORTHO05D009724 1.9e-82 311.2 551 37.7
Actinidia16844 Actinidia chinensis HOM05D007729 ORTHO05D009724 1.6e-81 308.1 554 36.3
EL10Ac4g09861 Beta vulgaris HOM05D007729 ORTHO05D009724 3.6e-81 307.0 537 37.8
Migut.B00991 Erythranthe guttata HOM05D007729 ORTHO05D009724 1.5e-79 301.6 575 36.3
Oeu053698.1 Olea europaea HOM05D007729 ORTHO05D009724 3.8e-78 297.0 495 38.6
CSS0040240 Camellia sinensis var. sinensis HOM05D007729 ORTHO05D009724 9.3e-77 292.4 598 36.6
vmacro01545 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 1.3e-75 288.5 498 38.2
DCAR_021068 Daucus carota HOM05D007729 ORTHO05D009724 3.0e-75 287.3 553 35.4
DCAR_021070 Daucus carota HOM05D007729 ORTHO05D009724 3.0e-75 287.3 553 35.4
Haze_04087 Corylus avellana HOM05D007729 ORTHO05D009724 2.5e-74 284.3 508 36.4
AUR62000694 Chenopodium quinoa HOM05D007729 ORTHO05D009724 4.5e-71 273.5 549 35.0
SGA_v2.0_scaffold53G19323 Striga asiatica HOM05D007729 ORTHO05D009724 2.9e-70 270.8 466 37.6
AUR62005264 Chenopodium quinoa HOM05D007729 ORTHO05D009724 1.4e-69 268.5 456 39.3
BcaC07g38483 Brassica carinata HOM05D007729 ORTHO05D009724 1.8e-67 261.5 512 35.7
Aqoxy2G02816 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 3.3e-66 257.3 375 41.6
Prupe.6G315600 Prunus persica HOM05D007729 ORTHO05D009724 7.4e-66 256.1 384 40.6
CARHR009150 Cardamine hirsuta HOM05D007729 ORTHO05D009724 2.2e-62 244.6 369 42.8
Duzib147G0321 Durio zibethinus HOM05D007729 ORTHO05D009724 2.8e-57 227.6 377 41.6
Sc16g0008910 Simmondsia chinensis HOM05D007729 ORTHO05D009724 3.8e-46 190.7 399 33.3
Hund21744 Selenicereus undatus HOM05D007729 ORTHO05D009724 8.5e-46 189.5 519 30.8
Atru.chr2.136 Acer truncatum HOM05D007729 ORTHO05D009724 2.0e-42 178.3 303 37.3
vmacro05864 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 3.1e-40 171.0 343 34.4
vmacro20072 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 7.7e-31 139.8 342 31.3
Haze_25193 Corylus avellana HOM05D007729 ORTHO05D009724 1.9e-29 135.2 194 40.7
Haze_15474 Corylus avellana HOM05D000683 ORTHO05D000507 3.1e-24 117.9 125 48.0
Aqoxy2G02815 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 1.0e-22 112.8 162 37.7
CARHR009140 Cardamine hirsuta HOM05D007729 ORTHO05D009724 7.5e-18 96.7 193 29.0
Haze_25604 Corylus avellana HOM05D007729 ORTHO05D009724 1.0e-11 76.3 124 41.9
MD12G1208200 Malus domestica HOM05D007729 ORTHO05D009724 5.7e-10 70.5 121 33.9
CBR_g1071 Chara braunii HOM05D036030 ORTHO05D009724 4.9e-09 67.4 169 32.5


User provided reference genes

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