Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.2e-172 609.8 317 100.0
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.4e-80 303.9 314 52.2
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.1e-75 287.7 323 50.8
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.9e-73 279.6 317 50.2
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.4e-72 277.3 317 47.6
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 9.3e-72 274.6 317 47.3
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.1e-71 273.5 317 48.6
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 3.5e-71 272.7 317 48.6
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.5e-71 272.7 322 48.4
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.5e-71 272.7 317 47.9
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.5e-71 272.7 316 49.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.5e-71 272.7 319 47.3
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 6.0e-71 271.9 321 48.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 6.0e-71 271.9 321 48.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.3e-70 270.8 320 47.5
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.3e-70 270.8 316 47.2
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.8e-70 270.4 317 47.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.8e-70 270.4 315 48.3
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.3e-70 270.0 315 47.3
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 3.0e-70 269.6 317 47.9
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.9e-70 269.2 316 47.2
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 5.1e-70 268.9 320 47.2
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 6.7e-70 268.5 314 47.1
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 6.7e-70 268.5 319 48.3
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 8.7e-70 268.1 320 48.4
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 8.7e-70 268.1 316 47.2
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 8.7e-70 268.1 321 47.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 8.7e-70 268.1 318 47.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-69 267.7 316 45.9
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.1e-69 267.7 315 47.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.1e-69 267.7 316 47.5
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.5e-69 267.3 320 48.4
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.5e-69 267.3 325 46.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.5e-69 267.3 315 47.3
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.5e-69 267.3 319 48.0
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.5e-69 267.3 315 48.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.5e-69 267.3 318 47.5
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.5e-69 266.5 314 46.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.5e-69 266.5 315 47.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.3e-69 266.2 316 47.8
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 3.3e-69 266.2 323 46.7
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.3e-69 266.2 321 47.7
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.3e-69 266.2 328 45.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.3e-69 265.8 315 47.0
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 4.3e-69 265.8 319 47.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.3e-69 265.8 316 45.3
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 7.4e-69 265.0 316 46.8
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 9.6e-69 264.6 316 46.8
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.3e-68 264.2 315 46.3
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.3e-68 264.2 316 47.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-68 264.2 320 45.9
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.6e-68 263.8 315 46.3
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.6e-68 263.8 315 46.0
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.1e-68 263.5 315 46.3
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.1e-68 263.5 319 48.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.8e-68 263.1 322 46.9
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.7e-68 262.7 315 46.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.8e-68 262.3 316 46.8
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.3e-68 261.9 320 45.6
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 6.3e-68 261.9 321 46.7
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.3e-68 261.9 320 46.6
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 6.3e-68 261.9 316 45.6
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 8.2e-68 261.5 315 46.0
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.1e-67 261.2 320 45.9
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.1e-67 261.2 322 46.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.4e-67 260.8 315 47.0
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.4e-67 260.8 320 45.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-67 260.8 320 46.2
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.8e-67 260.4 320 46.2
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.8e-67 260.4 315 47.6
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.4e-67 260.0 317 45.7
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.4e-67 260.0 315 46.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 2.4e-67 260.0 316 46.8
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 2.4e-67 260.0 319 46.4
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 3.1e-67 259.6 291 48.1
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 3.1e-67 259.6 316 47.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.1e-67 259.6 315 46.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 5.3e-67 258.8 323 46.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 6.9e-67 258.5 316 47.5
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.5e-66 257.3 320 45.0
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 2.0e-66 256.9 318 45.0
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 4.5e-66 255.8 330 45.5
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 5.9e-66 255.4 329 44.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.7e-65 253.8 320 43.8
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.2e-65 253.4 320 45.0
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.2e-65 253.4 313 45.7
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.2e-65 253.4 316 46.5
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.8e-65 252.7 320 45.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 3.8e-65 252.7 322 44.4
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.5e-65 251.9 322 44.1
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 5.5e-64 248.8 320 42.8
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 5.5e-64 248.8 300 46.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 7.2e-64 248.4 320 45.3
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 7.2e-64 248.4 315 44.8
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 9.3e-64 248.1 372 41.4
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.2e-63 247.7 300 46.0
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 2.1e-63 246.9 315 45.1
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 3.6e-63 246.1 302 46.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 6.1e-63 245.4 284 47.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 7.9e-63 245.0 323 42.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 7.9e-63 245.0 300 45.7
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.0e-62 244.6 294 48.3
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.3e-62 243.4 355 41.1
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 3.0e-62 243.0 315 44.1
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 3.9e-62 242.7 315 43.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.3e-61 239.2 323 42.4
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 6.3e-60 235.3 316 44.0
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.8e-59 233.8 292 45.5
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 4.1e-59 232.6 292 44.9
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 9.1e-59 231.5 326 44.8
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.2e-58 231.1 323 42.7
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.7e-57 227.3 283 45.9
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.5e-56 223.4 273 49.1
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.2e-56 221.9 265 47.5
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.7e-55 219.9 266 48.5
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 6.1e-55 218.8 271 45.4
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.1e-54 215.7 277 45.5
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.1e-53 214.5 266 46.6
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.4e-53 211.8 267 44.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 9.7e-53 211.5 314 40.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.4e-50 203.0 316 40.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 7.7e-50 201.8 320 39.7
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 2.5e-48 196.8 261 43.3
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.4e-45 186.0 230 47.4
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.7e-45 185.7 315 37.5
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-40 170.6 247 39.7
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.0e-38 164.9 224 42.9
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.3e-33 147.9 185 45.9
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 8.5e-33 145.2 208 43.8
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.0e-31 138.7 393 30.3
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 8.0e-31 138.7 177 44.6
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.4e-29 133.3 316 32.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 7.7e-26 122.1 255 32.5
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.3e-25 121.3 156 46.2
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.2e-24 116.7 124 46.0
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.2e-24 116.3 107 58.9
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.5e-24 115.9 107 57.9
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 9.5e-24 115.2 162 45.1
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 4.1e-19 99.8 362 27.3
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 7.0e-19 99.0 91 56.0
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 7.0e-19 99.0 141 42.6
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 5.0e-17 92.8 89 53.9
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.1e-16 91.7 126 40.5
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 4.7e-15 86.3 253 29.6
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.0e-14 85.1 90 47.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.3e-12 78.2 177 32.2
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.2e-11 73.6 112 37.5
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-09 68.2 55 65.5
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.7e-09 67.8 67 49.3
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.6e-09 65.5 150 34.0
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.9e-08 64.3 124 33.9
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.4e-06 58.2 65 49.2


User provided reference genes

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