Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 1.1e-153 546.6 270 100.0
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 2.2e-69 266.5 254 54.3
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 2.8e-69 266.2 243 56.0
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 3.7e-69 265.8 243 56.0
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 3.7e-69 265.8 243 56.0
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.3e-69 265.0 241 56.4
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 8.2e-69 264.6 243 55.6
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 8.2e-69 264.6 256 54.3
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 1.1e-68 264.2 254 52.8
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 1.8e-68 263.5 238 56.3
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 4.1e-68 262.3 258 55.8
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 5.3e-68 261.9 247 54.7
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 5.3e-68 261.9 240 55.4
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 7.0e-68 261.5 239 54.4
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 7.0e-68 261.5 245 55.5
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 7.0e-68 261.5 248 54.0
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 7.0e-68 261.5 254 53.5
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.2e-67 260.8 253 53.0
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 2.0e-67 260.0 235 56.6
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 2.6e-67 259.6 254 53.5
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 7.7e-67 258.1 247 54.3
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 1.0e-66 257.7 252 53.6
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 1.0e-66 257.7 255 52.2
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 1.7e-66 256.9 231 56.3
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 2.2e-66 256.5 236 56.4
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 3.8e-66 255.8 230 55.7
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 5.0e-66 255.4 247 53.0
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 5.0e-66 255.4 247 53.0
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 6.5e-66 255.0 248 52.4
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 6.5e-66 255.0 258 51.9
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 6.5e-66 255.0 236 54.2
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 8.5e-66 254.6 246 52.0
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 1.5e-65 253.8 255 50.6
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 2.5e-65 253.1 243 53.9
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.5e-65 253.1 229 54.6
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 5.5e-65 251.9 267 51.3
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 7.2e-65 251.5 230 56.1
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 9.4e-65 251.1 240 52.1
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 9.4e-65 251.1 255 51.4
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 1.2e-64 250.8 223 56.1
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 1.6e-64 250.4 245 53.5
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 2.1e-64 250.0 266 48.9
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 2.1e-64 250.0 228 54.4
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.7e-64 249.6 248 51.6
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 2.7e-64 249.6 258 51.9
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 3.6e-64 249.2 241 56.8
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 3.6e-64 249.2 254 51.2
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 3.6e-64 249.2 208 58.7
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 4.7e-64 248.8 248 51.6
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 4.7e-64 248.8 254 54.7
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 6.1e-64 248.4 236 53.4
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 8.0e-64 248.1 253 51.0
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 8.0e-64 248.1 233 53.6
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 8.0e-64 248.1 233 53.6
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 8.0e-64 248.1 228 53.1
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 1.0e-63 247.7 250 51.2
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 1.0e-63 247.7 234 53.0
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 1.4e-63 247.3 265 49.1
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.4e-63 247.3 240 53.3
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 2.3e-63 246.5 232 57.3
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 2.3e-63 246.5 258 51.6
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 3.0e-63 246.1 259 54.4
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 3.0e-63 246.1 256 50.8
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.0e-63 245.7 259 54.4
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 5.2e-63 245.4 233 52.4
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 5.2e-63 245.4 233 52.4
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 6.7e-63 245.0 259 54.1
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 1.1e-62 244.2 258 51.2
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 1.1e-62 244.2 260 49.6
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 1.5e-62 243.8 254 50.8
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 1.5e-62 243.8 258 48.4
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 2.0e-62 243.4 254 50.4
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 4.4e-62 242.3 244 50.8
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 5.7e-62 241.9 231 53.7
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 5.7e-62 241.9 254 50.8
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 5.7e-62 241.9 231 54.1
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 7.4e-62 241.5 230 51.7
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 9.7e-62 241.1 254 49.6
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 1.3e-61 240.7 249 50.6
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.7e-61 240.4 258 50.0
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 1.7e-61 240.4 264 48.1
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 2.8e-61 239.6 244 50.8
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 2.8e-61 239.6 275 47.6
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 6.3e-61 238.4 230 51.7
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 6.3e-61 238.4 250 50.8
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.1e-60 237.7 233 54.1
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 2.4e-60 236.5 220 55.5
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 5.3e-60 235.3 245 49.4
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 7.0e-60 235.0 219 53.0
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 1.6e-59 233.8 256 50.4
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.9e-59 231.9 232 50.4
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 5.9e-59 231.9 241 50.2
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 5.9e-59 231.9 259 48.6
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 1.3e-58 230.7 240 47.5
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.7e-58 230.3 252 51.6
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 1.7e-58 230.3 219 51.6
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 1.9e-57 226.9 259 51.0
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 4.7e-56 222.2 230 52.2
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 4.7e-56 222.2 236 50.4
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 3.0e-55 219.5 230 52.6
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 4.8e-53 212.2 260 44.2
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 8.3e-53 211.5 209 51.2
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 8.3e-53 211.5 217 49.8
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 1.1e-52 211.1 230 46.1
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 1.4e-52 210.7 275 42.2
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 7.0e-52 208.4 266 44.0
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 1.2e-51 207.6 277 42.2
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 5.0e-50 202.2 183 53.0
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 6.8e-47 191.8 174 55.7
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 3.1e-44 183.0 230 43.5
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 9.1e-44 181.4 177 53.1
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.7e-43 179.9 178 50.6
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.0e-42 175.6 158 53.2
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 5.0e-42 175.6 167 52.7
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 1.6e-40 170.6 171 50.9
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.7e-35 153.3 130 59.2
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 1.2e-30 137.9 101 61.4
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 5.8e-30 135.6 133 52.6
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 4.6e-27 125.9 127 50.4
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.0e-26 123.2 139 45.3
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 5.6e-25 119.0 129 46.5
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 1.2e-24 117.9 102 53.9
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 8.1e-24 115.2 129 45.7
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 2.4e-20 103.6 118 44.9
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 1.7e-18 97.4 91 53.8
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 5.1e-18 95.9 130 39.2
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 5.6e-17 92.4 82 53.7
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 1.2e-16 91.3 103 52.4
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 1.2e-16 91.3 103 52.4
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 2.1e-16 90.5 257 28.8
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 2.1e-16 90.5 105 41.9
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 2.0e-14 84.0 77 57.1
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 8.4e-13 78.6 75 52.0
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 1.1e-12 78.2 65 56.9
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.2e-06 58.2 51 51.0


User provided reference genes

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