Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 8.6e-179 630.2 311 100.0
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 4.2e-117 425.2 327 65.1
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.0e-59 234.6 352 40.1
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 1.2e-42 177.9 290 38.6
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 5.4e-40 169.1 346 34.4
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 2.1e-39 167.2 324 34.6
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 1.0e-38 164.9 378 31.5
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 1.7e-38 164.1 346 33.8
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 2.3e-38 163.7 322 33.9
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 3.0e-38 163.3 367 30.2
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 3.9e-38 162.9 303 36.6
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.6e-38 162.2 366 33.1
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 6.6e-38 162.2 337 34.1
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.6e-38 161.8 357 33.1
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 1.1e-37 161.4 367 30.0
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 1.5e-37 161.0 311 36.3
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 1.5e-37 161.0 358 33.0
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 1.5e-37 161.0 335 32.5
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 1.9e-37 160.6 310 36.5
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.9e-37 160.6 357 33.3
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 1.9e-37 160.6 305 36.1
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 2.5e-37 160.2 315 33.3
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 4.3e-37 159.5 309 35.6
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 4.3e-37 159.5 362 32.0
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 5.6e-37 159.1 351 34.2
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 7.3e-37 158.7 334 34.1
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 9.6e-37 158.3 382 29.3
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 1.6e-36 157.5 311 35.4
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 2.1e-36 157.1 311 34.7
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 3.6e-36 156.4 351 30.8
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 4.7e-36 156.0 308 32.8
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 6.2e-36 155.6 304 34.9
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 6.2e-36 155.6 315 34.6
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 1.1e-35 154.8 318 35.8
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 2.4e-35 153.7 322 32.9
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 2.4e-35 153.7 319 34.2
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 3.1e-35 153.3 315 34.6
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 4.0e-35 152.9 307 33.6
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 4.0e-35 152.9 342 30.4
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 5.2e-35 152.5 344 32.3
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 5.2e-35 152.5 334 32.0
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 6.8e-35 152.1 305 36.1
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 6.8e-35 152.1 305 36.1
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 8.9e-35 151.8 319 34.8
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 8.9e-35 151.8 340 32.4
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 1.2e-34 151.4 354 31.6
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 1.2e-34 151.4 306 35.6
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.2e-34 151.4 348 30.7
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 3.4e-34 149.8 313 33.9
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 5.8e-34 149.1 352 31.2
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 5.8e-34 149.1 325 35.4
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 9.9e-34 148.3 339 31.6
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 2.2e-33 147.1 292 35.3
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 2.2e-33 147.1 316 33.5
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 2.9e-33 146.7 345 30.7
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 3.8e-33 146.4 348 33.0
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 4.9e-33 146.0 323 33.4
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 4.9e-33 146.0 325 32.0
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 6.4e-33 145.6 345 30.7
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.4e-33 145.2 324 33.6
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 8.4e-33 145.2 335 31.0
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 1.1e-32 144.8 320 32.5
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.4e-32 144.4 336 31.8
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 1.4e-32 144.4 322 32.6
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 1.9e-32 144.1 355 29.3
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 1.9e-32 144.1 386 29.3
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 2.4e-32 143.7 242 37.6
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 2.4e-32 143.7 334 30.8
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 4.2e-32 142.9 337 31.2
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 4.2e-32 142.9 337 32.0
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 2.1e-31 140.6 391 27.4
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 2.7e-31 140.2 345 30.4
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 4.6e-31 139.4 353 29.2
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 6.0e-31 139.0 234 36.3
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 7.8e-31 138.7 344 29.7
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 5.1e-30 136.0 137 51.1
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 5.1e-30 136.0 378 29.6
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 5.6e-29 132.5 246 35.4
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 5.6e-29 132.5 229 35.4
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 7.3e-29 132.1 387 28.7
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 1.3e-28 131.3 383 28.5
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 1.6e-28 131.0 360 27.8
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 2.8e-28 130.2 250 35.2
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 4.8e-28 129.4 227 35.2
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 8.1e-28 128.6 249 34.9
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 1.1e-27 128.3 360 30.3
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 5.3e-27 125.9 251 33.5
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 5.3e-27 125.9 245 36.7
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 2.2e-25 120.6 215 38.1
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 8.4e-25 118.6 341 27.9
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.2e-23 114.8 338 27.5
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 2.1e-23 114.0 334 28.4
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 4.6e-23 112.8 149 43.6
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 5.6e-21 105.9 352 24.4
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 5.3e-19 99.4 278 27.3
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 1.2e-18 98.2 314 29.3
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 2.0e-18 97.4 223 29.6
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 1.7e-17 94.4 269 30.1
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.9e-16 90.9 367 24.8
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 2.7e-15 87.0 233 31.3
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 4.8e-12 76.3 353 25.5
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 1.1e-11 75.1 158 32.9
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 6.5e-09 65.9 143 30.8
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 1.1e-08 65.1 135 30.4
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 1.4e-08 64.7 224 28.1
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 1.9e-08 64.3 144 31.2
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 2.5e-08 63.9 136 31.6
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 3.2e-08 63.5 136 31.6
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 3.2e-08 63.5 136 31.6
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 3.2e-08 63.5 143 29.4
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 7.1e-08 62.4 151 29.8
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 9.3e-08 62.0 211 27.0
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-07 61.6 170 28.2
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 1.2e-07 61.6 121 33.1
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 1.2e-07 61.6 148 29.1
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.6e-07 61.2 148 30.4
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 1.6e-07 61.2 145 31.7
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 2.1e-07 60.8 136 31.6
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 2.1e-07 60.8 136 31.6
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 2.1e-07 60.8 147 29.9
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 2.1e-07 60.8 221 26.7
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 2.1e-07 60.8 121 33.9
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 2.7e-07 60.5 142 28.2
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 2.7e-07 60.5 178 29.8
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 2.7e-07 60.5 142 30.3
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 2.7e-07 60.5 172 28.5
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 3.5e-07 60.1 164 29.3
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 4.6e-07 59.7 141 29.8
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 7.9e-07 58.9 159 32.7
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 7.9e-07 58.9 151 29.8
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 7.9e-07 58.9 151 29.8
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 7.9e-07 58.9 131 32.8
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 1.8e-06 57.8 126 31.0
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 1.8e-06 57.8 137 29.9
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 1.8e-06 57.8 221 26.7
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.8e-06 57.8 107 31.8
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 2.3e-06 57.4 143 30.8
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.3e-06 57.4 158 29.7
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 2.3e-06 57.4 122 31.1
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 3.0e-06 57.0 124 30.6
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 3.0e-06 57.0 145 27.6
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 3.9e-06 56.6 159 31.4
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 3.9e-06 56.6 146 29.5
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 3.9e-06 56.6 122 31.1
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 5.1e-06 56.2 145 31.0
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 5.1e-06 56.2 145 31.0
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 5.1e-06 56.2 129 29.5
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 5.1e-06 56.2 148 28.4
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 5.1e-06 56.2 124 29.8
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 5.1e-06 56.2 127 29.1
Os04g0645500 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 5.1e-06 56.2 183 27.3
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 5.1e-06 56.2 134 29.9
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 5.1e-06 56.2 126 31.0
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 5.1e-06 56.2 142 28.2
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 5.1e-06 56.2 129 30.2
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 6.7e-06 55.8 164 25.0
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 6.7e-06 55.8 124 29.8
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 6.7e-06 55.8 108 34.3
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 8.7e-06 55.5 141 28.4
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 8.7e-06 55.5 142 31.0
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 8.7e-06 55.5 128 28.9
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 8.7e-06 55.5 127 31.5


User provided reference genes

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