Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 5.6e-54 214.2 118 100.0
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.5e-43 179.5 116 86.2
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 81.4
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 79.7
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 1.3e-39 166.4 116 77.6
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 76.3
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 76.3
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 76.3
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 76.3
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 78.0
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 77.1
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 6.6e-39 164.1 118 78.0
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 6.6e-39 164.1 118 78.0
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 78.0
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 78.0
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 78.0
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 78.0
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 1.5e-38 162.9 118 77.1
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 78.0
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 1.9e-38 162.5 118 77.1
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 77.1
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 77.1
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 77.1
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 75.4
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 77.1
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 76.3
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 76.3
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 77.1
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 76.3
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 77.1
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 77.1
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 76.3
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 77.1
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 76.3
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 76.3
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 76.3
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 76.3
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 76.3
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 76.3
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 76.3
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 7.3e-38 160.6 118 76.3
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 73.7
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 77.1
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 77.1
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 76.3
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 76.3
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 76.3
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 76.3
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 2.8e-37 158.7 118 75.4
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 8.1e-37 157.1 118 75.4
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 8.1e-37 157.1 118 75.4
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 8.1e-37 157.1 150 62.7
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 8.1e-37 157.1 118 76.3
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.4e-36 156.4 118 75.4
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 6.8e-36 154.1 118 74.6
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 1.5e-35 152.9 118 72.9
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 2.0e-35 152.5 118 73.7
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 2.0e-35 152.5 118 72.9
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 73.7
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 73.7
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 3.4e-35 151.8 118 74.6
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 3.4e-35 151.8 118 72.9
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 4.4e-35 151.4 118 71.2
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 4.4e-35 151.4 118 71.2
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 4.4e-35 151.4 118 72.9
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 5.8e-35 151.0 118 72.9
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 5.8e-35 151.0 118 72.0
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 5.8e-35 151.0 118 72.9
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 5.8e-35 151.0 118 72.9
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 9.9e-35 150.2 118 72.9
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.7e-34 149.4 116 74.1
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 1.7e-34 149.4 118 72.0
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 2.2e-34 149.1 118 72.9
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 2.9e-34 148.7 118 72.9
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 3.8e-34 148.3 118 72.0
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 3.8e-34 148.3 118 72.0
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 3.8e-34 148.3 118 72.0
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 3.8e-34 148.3 118 72.0
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 3.8e-34 148.3 118 72.0
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 4.9e-34 147.9 118 72.0
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 4.9e-34 147.9 118 72.0
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 4.9e-34 147.9 118 71.2
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 6.4e-34 147.5 116 70.7
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 4.1e-33 144.8 118 70.3
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 5.4e-33 144.4 118 69.5
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 6.6e-31 137.5 118 68.6
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 1.8e-28 129.4 101 73.3
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 1.8e-28 129.4 118 66.1
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 5.2e-28 127.9 103 70.9
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 2.9e-26 122.1 104 69.2
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 1.1e-25 120.2 118 63.6
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 1.9e-25 119.4 101 69.3
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 2.4e-25 119.0 108 62.0
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 7.1e-25 117.5 102 67.6
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 1.2e-24 116.7 101 68.3
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 4.6e-24 114.8 102 65.7
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 2.3e-23 112.5 90 71.1
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 2.5e-22 109.0 90 70.0
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 4.3e-22 108.2 119 52.9
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 1.3e-21 106.7 92 67.4
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.6e-21 106.3 86 70.9
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 5.3e-20 101.3 99 61.6
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 1.5e-19 99.8 117 49.6
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 2.0e-19 99.4 120 50.8
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 4.5e-19 98.2 59 84.7
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 5.8e-19 97.8 58 86.2
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 9.9e-19 97.1 60 83.3
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 1.3e-18 96.7 58 84.5
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 2.9e-18 95.5 60 85.0
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 3.8e-18 95.1 59 83.1
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 8.4e-18 94.0 64 79.7
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.1e-17 93.6 69 73.9
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 1.9e-17 92.8 60 83.3
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.4e-17 92.4 60 81.7
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 3.2e-17 92.0 60 81.7
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 5.4e-17 91.3 58 82.8
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 2.3e-15 85.9 60 78.3
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 6.2e-13 77.8 60 75.0
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 1.9e-09 66.2 96 46.9
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 5.5e-09 64.7 47 72.3
Pp3c5_11560 Physcomitrium patens HOM05D000443 ORTHO05D317036 1.1e-06 57.0 48 58.3


User provided reference genes

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