Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.1e-141 506.9 321 100.0
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 6.7e-86 321.6 254 90.2
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 3.7e-84 315.8 305 77.4
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 2.1e-39 167.2 255 62.0
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 3.4e-37 159.8 245 53.5
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 3.8e-28 129.8 202 44.1
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 7.1e-27 125.6 101 66.3
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 7.3e-24 115.5 88 65.9
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 4.8e-23 112.8 164 60.4
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 1.8e-22 110.9 118 52.5
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 2.4e-22 110.5 168 56.5
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 3.1e-22 110.2 136 48.5
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 5.3e-22 109.4 100 57.0
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 6.9e-22 109.0 179 54.2
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 6.9e-22 109.0 170 56.5
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 6.9e-22 109.0 179 54.2
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 1.2e-21 108.2 117 52.1
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.5e-21 107.8 108 53.7
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 1.5e-21 107.8 179 54.7
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.5e-21 107.8 170 54.7
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 2.0e-21 107.5 156 57.7
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 2.0e-21 107.5 114 50.9
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 2.0e-21 107.5 112 52.7
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 3.4e-21 106.7 172 54.7
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 3.4e-21 106.7 156 62.8
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.4e-21 106.7 152 59.9
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.4e-21 106.3 163 51.5
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 4.4e-21 106.3 172 51.2
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 4.4e-21 106.3 172 46.5
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 5.8e-21 105.9 173 52.0
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 7.6e-21 105.5 164 56.1
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 9.9e-21 105.1 180 52.8
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 1.3e-20 104.8 105 56.2
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 1.3e-20 104.8 172 49.4
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.3e-20 104.8 143 44.1
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.3e-20 104.8 179 57.5
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.7e-20 104.4 125 47.2
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.7e-20 104.4 172 54.7
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.7e-20 104.4 109 52.3
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 2.2e-20 104.0 125 47.2
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 2.9e-20 103.6 112 52.7
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 2.9e-20 103.6 104 52.9
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 3.8e-20 103.2 112 52.7
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 3.8e-20 103.2 121 49.6
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 3.8e-20 103.2 100 55.0
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 4.9e-20 102.8 171 59.6
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 4.9e-20 102.8 164 54.3
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 6.4e-20 102.4 97 55.7
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 6.4e-20 102.4 119 50.4
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 6.4e-20 102.4 112 52.7
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 6.4e-20 102.4 172 50.0
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 8.4e-20 102.1 172 52.9
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.1e-19 101.7 96 57.3
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.1e-19 101.7 108 49.1
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.4e-19 101.3 108 50.0
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.4e-19 100.5 144 64.6
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 2.4e-19 100.5 98 56.1
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 3.2e-19 100.1 170 51.8
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 3.2e-19 100.1 96 56.2
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 4.2e-19 99.8 173 50.9
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 4.2e-19 99.8 170 51.8
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 4.2e-19 99.8 100 53.0
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 4.2e-19 99.8 170 52.9
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 5.4e-19 99.4 85 57.6
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 7.1e-19 99.0 121 47.1
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 9.3e-19 98.6 112 48.2
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 9.3e-19 98.6 172 55.2
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 1.2e-18 98.2 130 43.8
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 1.2e-18 98.2 138 42.0
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 1.6e-18 97.8 130 43.1
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 1.6e-18 97.8 105 48.6
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 1.6e-18 97.8 105 48.6
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 1.6e-18 97.8 105 48.6
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 1.6e-18 97.8 96 55.2
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 2.1e-18 97.4 129 44.2
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 2.1e-18 97.4 130 43.1
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 2.1e-18 97.4 130 43.1
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.1e-18 97.4 95 56.8
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 2.7e-18 97.1 177 55.4
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 2.7e-18 97.1 177 55.4
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 2.7e-18 97.1 165 61.2
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 2.7e-18 97.1 169 50.3
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 3.5e-18 96.7 105 47.6
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 4.6e-18 96.3 105 48.6
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 4.6e-18 96.3 105 48.6
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 4.6e-18 96.3 152 63.2
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 6.0e-18 95.9 95 52.6
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 7.8e-18 95.5 97 53.6
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 7.8e-18 95.5 138 41.3
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 1.0e-17 95.1 105 47.6
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 1.0e-17 95.1 105 48.6
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 1.3e-17 94.7 89 50.6
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 1.3e-17 94.7 87 58.6
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 8.7e-17 92.0 85 55.3
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.5e-16 91.3 95 50.5
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 2.8e-15 87.0 150 39.3
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 3.6e-15 86.7 96 51.0
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 6.2e-15 85.9 126 44.4
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 6.2e-15 85.9 130 42.3
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 1.5e-13 81.3 117 41.9
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 1.4e-11 74.7 69 52.2
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.9e-11 74.3 69 53.6
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.4e-11 73.9 65 60.0
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 5.4e-11 72.8 184 29.3
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.0e-09 68.6 69 52.2
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.4e-06 58.2 105 62.9


User provided reference genes

Program Settings