Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 0.0e+00 1572.0 777 100.0
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 2.6e-176 623.2 699 45.9
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.0e-175 621.3 699 46.1
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 4.9e-175 619.0 699 45.8
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 1.1e-174 617.8 748 44.5
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.1e-173 613.6 694 46.7
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 6.0e-173 612.1 686 46.2
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 1.3e-172 610.9 741 44.3
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 3.9e-172 609.4 707 45.0
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 1.9e-171 607.1 704 44.7
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 1.9e-171 607.1 731 45.0
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 3.3e-171 606.3 694 45.2
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 4.3e-171 605.9 699 45.9
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 9.6e-171 604.7 747 42.8
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.6e-170 604.0 709 43.9
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 2.1e-170 603.6 760 44.1
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 2.8e-170 603.2 733 43.5
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 3.7e-170 602.8 740 43.2
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 6.2e-170 602.1 727 43.9
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 1.4e-169 600.9 710 44.5
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.4e-169 600.9 708 43.6
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.4e-169 600.1 729 45.0
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 9.0e-169 598.2 709 43.7
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 9.0e-169 598.2 721 42.9
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 9.0e-169 598.2 738 43.4
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 7.6e-168 595.1 736 42.9
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 1.0e-167 594.7 710 43.5
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 1.3e-167 594.3 724 43.4
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 2.2e-167 593.6 733 43.8
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.2e-167 593.6 729 43.3
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 2.9e-167 593.2 733 43.4
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 1.9e-166 590.5 737 41.9
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 1.9e-166 590.5 750 42.5
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 5.5e-166 589.0 733 43.5
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 5.5e-166 589.0 735 42.3
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 7.1e-166 588.6 714 43.0
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 9.3e-166 588.2 735 42.6
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 9.3e-166 588.2 723 42.5
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 6.1e-165 585.5 724 43.5
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 1.8e-164 583.9 735 41.6
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 2.3e-164 583.6 726 42.4
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 3.9e-164 582.8 711 44.2
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 6.7e-164 582.0 738 42.1
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 1.5e-163 580.9 707 44.0
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 1.5e-163 580.9 735 43.0
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 3.3e-163 579.7 731 42.8
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 3.3e-163 579.7 759 42.7
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 4.3e-163 579.3 738 42.1
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 4.3e-163 579.3 732 42.2
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 5.7e-163 578.9 731 41.5
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 1.3e-162 577.8 698 44.6
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 2.2e-162 577.0 726 43.3
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 8.2e-162 575.1 749 41.0
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 1.4e-161 574.3 737 41.9
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 3.1e-161 573.2 732 42.5
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 9.0e-161 571.6 749 41.8
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 2.0e-160 570.5 688 44.2
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.6e-160 570.1 801 39.5
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 2.6e-160 570.1 705 42.4
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 3.4e-160 569.7 737 41.8
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 1.0e-159 568.2 730 43.7
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 1.0e-159 568.2 740 41.5
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 3.8e-159 566.2 734 42.6
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 5.0e-159 565.8 727 42.0
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 5.0e-159 565.8 737 41.7
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.1e-158 564.7 720 41.9
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 3.2e-158 563.1 752 40.8
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 5.5e-158 562.4 712 43.8
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 1.2e-157 561.2 726 43.1
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 1.2e-157 561.2 726 43.1
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 1.2e-157 561.2 718 43.6
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 2.7e-157 560.1 712 43.8
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 6.1e-157 558.9 729 42.2
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 2.3e-156 557.0 723 43.3
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 5.1e-156 555.8 735 41.9
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 1.5e-155 554.3 729 42.7
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 2.0e-155 553.9 730 42.7
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 3.3e-155 553.1 732 41.8
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 9.7e-155 551.6 651 44.5
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 6.3e-154 548.9 721 43.3
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 5.3e-153 545.8 730 42.2
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 5.9e-152 542.3 724 40.9
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 5.9e-152 542.3 730 41.0
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 7.7e-152 542.0 704 42.3
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 1.7e-151 540.8 741 40.2
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 6.5e-151 538.9 718 43.0
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 1.0e-148 531.6 736 39.5
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 1.8e-148 530.8 728 39.4
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 2.3e-148 530.4 706 40.2
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 8.8e-148 528.5 653 42.6
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 9.7e-147 525.0 727 41.7
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.7e-146 524.2 619 43.6
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 5.9e-144 515.8 609 43.2
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 2.1e-141 507.3 706 40.1
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 8.8e-140 501.9 736 38.7
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.1e-137 495.0 663 42.2
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 1.2e-131 474.9 711 38.7
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 4.4e-131 473.0 654 41.4
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 3.7e-130 469.9 799 36.8
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.1e-125 454.1 625 41.0
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 1.3e-122 444.9 588 42.2
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.6e-120 438.0 732 37.8
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.1e-117 427.6 526 42.2
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 5.4e-113 412.9 531 41.6
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 2.4e-105 387.5 692 36.1
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 1.1e-100 372.1 435 46.4
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 1.1e-94 352.1 472 42.6
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.5e-94 350.9 415 46.3
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 7.1e-89 332.8 717 32.9
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 6.6e-87 326.2 336 53.3
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.2e-83 315.5 638 33.1
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 1.0e-63 249.2 258 44.6
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 6.2e-61 240.0 506 29.6
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 2.9e-58 231.1 476 33.4
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 1.9e-57 228.4 304 40.1
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 1.3e-45 189.1 193 44.0
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 4.1e-44 184.1 197 43.1
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 2.6e-43 181.4 153 50.3
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 1.4e-41 175.6 160 53.1
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 3.4e-35 154.5 236 38.1
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 5.9e-35 153.7 166 43.4
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 3.9e-31 141.0 172 48.3
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 1.7e-29 135.6 175 44.6
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 1.0e-23 116.3 338 29.3
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 2.6e-22 111.7 346 29.5
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 2.8e-21 108.2 96 45.8
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 1.4e-20 105.9 348 28.7
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 7.0e-20 103.6 632 24.4
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 2.9e-18 98.2 355 25.1
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 2.1e-16 92.0 89 58.4
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 2.1e-16 92.0 89 58.4
PRCOL_00004569 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 3.6e-16 91.3 341 27.3
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 2.8e-13 81.6 117 44.4
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 4.8e-13 80.9 262 26.3
BolC1t01100H Brassica oleracea HOM05D005079 ORTHO05D006362 1.1e-12 79.7 105 45.7
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 5.0e-10 70.9 95 36.8
Carub.0003s1163 Capsella rubella HOM05D000639 ORTHO05D007519 6.5e-10 70.5 348 23.9
AL3G23930 Arabidopsis lyrata HOM05D000639 ORTHO05D007519 1.9e-09 68.9 260 25.4
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 4.2e-09 67.8 260 27.3
MCO03G234 Micromonas commoda HOM05D000639 ORTHO05D006731 7.2e-09 67.0 266 24.8
AT3G12270 Arabidopsis thaliana HOM05D000639 ORTHO05D007519 2.1e-08 65.5 339 22.1
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 2.7e-08 65.1 285 25.6
HPP92_008920 Vanilla planifolia HOM05D005079 ORTHO05D006362 4.7e-08 64.3 88 42.0
BraA03t12910Z Brassica rapa HOM05D000639 ORTHO05D007519 8.0e-08 63.5 195 27.7
MCO05G072 Micromonas commoda HOM05D000639 ORTHO05D003485 8.0e-08 63.5 271 25.5
CBR_g41214 Chara braunii HOM05D005079 ORTHO05D006362 1.4e-07 62.8 56 50.0
Thhalv10020338m.g Eutrema salsugineum HOM05D000639 ORTHO05D007519 1.8e-07 62.4 155 30.3
Sp3g10490 Schrenkiella parvula HOM05D000639 ORTHO05D007519 1.8e-07 62.4 195 27.2
A03p37560 Brassica napus HOM05D000639 ORTHO05D007519 2.3e-07 62.0 195 27.2
C03p45550 Brassica napus HOM05D000639 ORTHO05D007519 2.3e-07 62.0 300 24.0
CiPaw.02G082800 Carya illinoinensis HOM05D000639 ORTHO05D004019 2.3e-07 62.0 404 23.0
Aa31LG3G6490 Aethionema arabicum HOM05D000639 ORTHO05D007519 3.0e-07 61.6 155 29.7
BcaB04g18688 Brassica carinata HOM05D000639 ORTHO05D007519 4.0e-07 61.2 195 26.7
CARHR086820 Cardamine hirsuta HOM05D000639 ORTHO05D007519 5.2e-07 60.8 155 30.3
Os04g0677066 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D006731 5.2e-07 60.8 148 31.8
DCAR_024066 Daucus carota HOM05D000639 ORTHO05D003485 6.8e-07 60.5 323 21.7
C05p55520 Brassica napus HOM05D000639 ORTHO05D007519 8.8e-07 60.1 299 22.7
BcaC01g04056 Brassica carinata HOM05D000639 ORTHO05D007519 1.5e-06 59.3 195 26.7
A05p37090 Brassica napus HOM05D000639 ORTHO05D007519 1.5e-06 59.3 155 28.4
BraA05t22506Z Brassica rapa HOM05D000639 ORTHO05D007519 2.0e-06 58.9 155 28.4
MCO05G494 Micromonas commoda HOM05D000639 ORTHO05D007519 2.0e-06 58.9 151 28.5
Phvul.009G248200 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 2.0e-06 58.9 309 24.3
Pp3c14_22470 Physcomitrium patens HOM05D000639 ORTHO05D003485 2.0e-06 58.9 293 22.5
CARHR237340 Cardamine hirsuta HOM05D000639 ORTHO05D003485 2.6e-06 58.5 324 22.5
Glyma.09G044700 Glycine max HOM05D000639 ORTHO05D004019 2.6e-06 58.5 317 23.7
SMO118G0363 Selaginella moellendorffii HOM05D000639 ORTHO05D004019 2.6e-06 58.5 331 23.6
BolC5t34218H Brassica oleracea HOM05D000639 ORTHO05D007519 3.4e-06 58.2 194 26.3
Medtr2g436780 Medicago truncatula HOM05D000639 ORTHO05D004019 3.4e-06 58.2 328 25.0
RhsimUnG0102700 Rhododendron simsii HOM05D000639 ORTHO05D006731 3.4e-06 58.2 149 30.9
Aqoxy7G01263 Aquilegia oxysepala HOM05D000639 ORTHO05D003485 4.4e-06 57.8 226 23.0
QL01p000726 Quercus lobata HOM05D000639 ORTHO05D006731 4.4e-06 57.8 149 30.2
VMungo1309G0809 Vigna mungo HOM05D000639 ORTHO05D004019 4.4e-06 57.8 307 23.8
Cpa.g.sc16.172 Carica papaya HOM05D000639 ORTHO05D004019 5.7e-06 57.4 326 23.9
AUR62027449 Chenopodium quinoa HOM05D000639 ORTHO05D003485 7.5e-06 57.0 325 22.2
AUR62031251 Chenopodium quinoa HOM05D000639 ORTHO05D003485 7.5e-06 57.0 325 22.2
TAR362G0702 Trochodendron aralioides HOM05D000639 ORTHO05D004019 7.5e-06 57.0 328 24.4
CDE04G0837 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 9.8e-06 56.6 83 37.3
Lj7A672G59 Lonicera japonica HOM05D000639 ORTHO05D003485 9.8e-06 56.6 160 25.6
Lalb_Chr22g0349761 Lupinus albus HOM05D000639 ORTHO05D003485 9.8e-06 56.6 255 23.9
Oeu049538.1 Olea europaea HOM05D000639 ORTHO05D003485 9.8e-06 56.6 245 22.9
Pp3c10_9950 Physcomitrium patens HOM05D000639 ORTHO05D003485 9.8e-06 56.6 245 22.4
QL06p008928 Quercus lobata HOM05D000639 ORTHO05D004019 9.8e-06 56.6 327 23.9


User provided reference genes

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