Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 0.0e+00 2097.0 1050 100.0
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 3.9e-151 540.0 1019 35.7
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 2.7e-99 367.9 1034 27.8
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 3.0e-98 364.4 1043 27.6
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 6.6e-90 336.7 1029 26.2
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.1e-89 335.9 1029 26.2
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 1.6e-88 332.0 1041 26.8
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 5.2e-87 327.0 1050 27.2
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 5.2e-87 327.0 1035 26.6
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 1.2e-86 325.9 1041 27.7
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.5e-86 325.5 1038 27.4
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 1.5e-86 325.5 1062 25.9
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.4e-84 318.9 1056 26.2
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.4e-84 318.9 1054 26.6
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 1.4e-84 318.9 1042 25.6
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 7.1e-84 316.6 1064 27.1
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 1.2e-83 315.8 1051 26.2
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.2e-83 315.8 1059 25.6
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 6.0e-83 313.5 1044 26.2
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.0e-82 312.8 1071 27.1
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 1.0e-82 312.8 1022 26.6
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.7e-82 312.0 1045 26.3
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 3.0e-82 311.2 1069 25.7
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 1.1e-81 309.3 1065 25.0
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.1e-81 309.3 1070 26.0
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 4.3e-81 307.4 1072 25.7
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 9.6e-81 306.2 1043 27.1
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.8e-80 304.7 1015 26.1
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 3.6e-80 304.3 1052 26.1
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 4.8e-80 303.9 881 26.4
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 2.4e-79 301.6 1043 26.4
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 2.4e-79 301.6 1037 26.2
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.1e-79 301.2 1062 26.7
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 5.3e-79 300.4 1039 25.4
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.2e-78 299.3 1063 25.8
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 1.5e-78 298.9 1058 26.0
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 2.6e-78 298.1 1043 26.6
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 2.6e-78 298.1 1038 26.6
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 3.4e-78 297.7 1035 24.5
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 4.4e-78 297.4 1082 26.1
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 7.6e-78 296.6 1049 25.4
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 7.6e-78 296.6 1035 24.8
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.3e-77 295.8 1067 26.2
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 2.2e-77 295.0 1047 25.7
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.2e-77 295.0 1047 25.4
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 2.2e-77 295.0 1055 25.2
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 2.2e-77 295.0 1061 24.8
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 3.8e-77 294.3 1035 24.5
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.1e-76 292.7 1062 26.5
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.4e-76 292.4 1039 25.4
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.4e-76 292.4 1027 25.1
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 5.4e-76 290.4 1053 25.0
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.6e-75 288.9 1045 25.6
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 2.1e-75 288.5 1075 26.2
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 6.6e-74 283.5 1067 26.3
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 1.9e-73 282.0 1047 24.7
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 5.6e-73 280.4 1051 24.7
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 9.6e-73 279.6 880 26.2
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 1.3e-72 279.3 1036 24.8
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 1.6e-72 278.9 1066 25.2
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.8e-71 275.4 951 26.4
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.9e-69 268.1 1052 24.4
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.4e-69 266.9 974 26.1
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 5.5e-68 263.8 1014 24.7
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.3e-66 259.2 1050 24.4
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 4.3e-65 254.2 743 27.5
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.6e-64 252.3 574 28.0
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.1e-63 249.6 1044 24.7
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 6.9e-63 246.9 794 25.9
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 3.4e-62 244.6 896 26.1
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 3.8e-61 241.1 945 25.2
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 8.4e-61 240.0 1037 23.8
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 1.4e-60 239.2 731 26.9
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.6e-59 235.7 791 25.5
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 1.6e-59 235.7 1153 23.0
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 4.6e-59 234.2 769 24.8
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.8e-58 232.3 910 24.8
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.7e-56 224.6 846 25.8
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.4e-55 222.6 993 23.2
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 9.0e-55 219.9 1048 22.8
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.2e-54 219.5 860 25.8
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.0e-54 218.8 973 23.9
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 6.5e-53 213.8 572 25.3
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 7.9e-51 206.8 891 24.1
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 6.7e-50 203.8 434 31.1
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 6.3e-48 197.2 441 29.0
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 5.9e-46 190.7 440 30.5
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.1e-44 186.4 709 23.1
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.6e-43 182.6 318 34.9
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 7.9e-35 153.7 820 23.0
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 8.8e-34 150.2 277 31.4
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 9.7e-33 146.7 799 23.5
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 5.7e-25 120.9 415 26.7
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 7.5e-25 120.6 456 24.6
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.5e-22 111.7 175 33.7
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.9e-22 110.9 378 28.6
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.2e-21 109.0 174 36.2
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.2e-17 96.7 168 32.7
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 7.5e-17 94.0 371 26.7
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 9.8e-17 93.6 174 32.8
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 6.3e-16 90.9 405 25.2
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.4e-15 89.0 156 34.6
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.7e-14 85.5 345 26.4
CBR_g36330 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-11 76.6 96 42.7
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 2.1e-11 75.9 212 29.2
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 3.1e-07 62.0 140 29.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 4.1e-07 61.6 262 24.0
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.9e-06 57.8 174 28.7


User provided reference genes

Program Settings