Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_21020 Physcomitrium patens HOM05D003540 ORTHO05D004012 4.5e-36 154.1 77 100.0
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 3.3e-23 111.3 74 71.6
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 4.6e-09 64.3 68 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 3.0e-08 61.6 78 46.2
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 5.1e-08 60.8 56 53.6
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 6.7e-08 60.5 56 53.6
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 8.8e-08 60.1 57 50.9
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 1.1e-07 59.7 53 58.5
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.1e-07 59.7 57 50.9
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.5e-07 59.3 57 49.1
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.5e-07 59.3 51 58.8
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.0e-07 58.9 57 49.1
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 2.0e-07 58.9 51 58.8
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 2.0e-07 58.9 57 49.1
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 2.6e-07 58.5 72 45.8
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 2.6e-07 58.5 72 47.2
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 2.6e-07 58.5 51 58.8
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 2.6e-07 58.5 57 49.1
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 3.3e-07 58.2 56 50.0
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 3.3e-07 58.2 57 49.1
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 3.3e-07 58.2 56 50.0
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 4.4e-07 57.8 69 44.9
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 4.4e-07 57.8 69 44.9
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 5.7e-07 57.4 70 44.3
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 5.7e-07 57.4 56 50.0
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 7.4e-07 57.0 57 47.4
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 7.4e-07 57.0 51 56.9
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 7.4e-07 57.0 51 56.9
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 9.7e-07 56.6 57 49.1
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 9.7e-07 56.6 52 51.9
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 9.7e-07 56.6 57 49.1
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 9.7e-07 56.6 70 44.3
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 9.7e-07 56.6 57 47.4
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 9.7e-07 56.6 57 47.4
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 9.7e-07 56.6 57 49.1
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 9.7e-07 56.6 51 54.9
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.3e-06 56.2 57 49.1
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 1.3e-06 56.2 71 39.4
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 1.3e-06 56.2 57 47.4
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.3e-06 56.2 50 56.0
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 1.7e-06 55.8 56 48.2
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 1.7e-06 55.8 67 44.8
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 1.7e-06 55.8 51 51.0
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.7e-06 55.8 56 50.0
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.7e-06 55.8 70 44.3
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.7e-06 55.8 51 51.0
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 2.2e-06 55.5 70 42.9
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 2.2e-06 55.5 57 47.4
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.2e-06 55.5 65 46.2
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.2e-06 55.5 56 48.2
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 2.2e-06 55.5 56 46.4
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 2.2e-06 55.5 56 46.4
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 2.2e-06 55.5 56 46.4
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 2.8e-06 55.1 57 47.4
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 2.8e-06 55.1 54 50.0
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 2.8e-06 55.1 70 42.9
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 2.8e-06 55.1 70 42.9
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 2.8e-06 55.1 54 50.0
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.8e-06 55.1 56 48.2
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 3.7e-06 54.7 54 48.1
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-06 54.7 64 45.3
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 3.7e-06 54.7 64 45.3
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 3.7e-06 54.7 59 45.8
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 3.7e-06 54.7 63 47.6
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 4.8e-06 54.3 56 46.4
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 4.8e-06 54.3 55 47.3
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 4.8e-06 54.3 65 44.6
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 4.8e-06 54.3 70 41.4
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 4.8e-06 54.3 52 48.1
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 4.8e-06 54.3 64 45.3
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 4.8e-06 54.3 70 41.4
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 6.3e-06 53.9 54 48.1
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 6.3e-06 53.9 54 48.1
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 6.3e-06 53.9 64 45.3
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.3e-06 53.9 57 47.4
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.3e-06 53.9 51 52.9
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.3e-06 53.9 57 47.4
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 6.3e-06 53.9 57 47.4
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 6.3e-06 53.9 55 47.3
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 6.3e-06 53.9 60 46.7
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 6.3e-06 53.9 57 45.6
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 6.3e-06 53.9 50 52.0
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 6.3e-06 53.9 63 50.8
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 6.3e-06 53.9 50 50.0
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 8.2e-06 53.5 64 45.3
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 8.2e-06 53.5 64 45.3
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 8.2e-06 53.5 64 45.3
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 8.2e-06 53.5 64 45.3
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 8.2e-06 53.5 57 45.6
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 8.2e-06 53.5 70 41.4
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 8.2e-06 53.5 64 45.3
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 8.2e-06 53.5 60 50.0


User provided reference genes

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