Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_20260 Physcomitrium patens HOM05D004209 ORTHO05D004970 1.9e-124 449.1 222 100.0
Pp3c6_20270 Physcomitrium patens HOM05D004209 ORTHO05D004970 1.9e-124 449.1 222 100.0
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 2.4e-34 149.8 90 85.6
Sabra11G0024700 Salix brachista HOM05D004209 ORTHO05D004970 2.3e-24 116.7 89 64.0
TAR624G0645 Trochodendron aralioides HOM05D004209 ORTHO05D004970 2.3e-24 116.7 102 59.8
TWI38G0662 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 3.0e-24 116.3 89 65.2
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 5.1e-24 115.5 102 57.8
Duzib192G0389 Durio zibethinus HOM05D004209 ORTHO05D004970 5.1e-24 115.5 102 58.8
CSS0007400 Camellia sinensis var. sinensis HOM05D004209 ORTHO05D004970 6.6e-24 115.2 89 65.2
CSS0021470 Camellia sinensis var. sinensis HOM05D004209 ORTHO05D004970 6.6e-24 115.2 89 65.2
Gohir.A05G167500 Gossypium hirsutum HOM05D004209 ORTHO05D004970 6.6e-24 115.2 89 64.0
PSO832G1281 Papaver somniferum HOM05D004209 ORTHO05D004970 6.6e-24 115.2 90 62.2
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 8.6e-24 114.8 90 62.2
PSO210G5932 Papaver somniferum HOM05D004209 ORTHO05D004970 8.6e-24 114.8 90 62.2
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 1.1e-23 114.4 113 54.9
Aa31LG6G3270 Aethionema arabicum HOM05D004209 ORTHO05D004970 1.5e-23 114.0 89 62.9
SalBow8G1884 Salvia bowleyana HOM05D004209 ORTHO05D004970 1.9e-23 113.6 102 57.8
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 4.3e-23 112.5 89 61.8
Gohir.D05G170500 Gossypium hirsutum HOM05D004209 ORTHO05D004970 4.3e-23 112.5 102 56.9
PSO210G3083 Papaver somniferum HOM05D004209 ORTHO05D004970 4.3e-23 112.5 90 62.2
PSO210G7066 Papaver somniferum HOM05D004209 ORTHO05D004970 4.3e-23 112.5 90 62.2
Potri.004G031500 Populus trichocarpa HOM05D004209 ORTHO05D004970 4.3e-23 112.5 102 56.9
Lj2A275T37 Lonicera japonica HOM05D004209 ORTHO05D004970 5.6e-23 112.1 102 56.9
TWI63G1530 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 5.6e-23 112.1 89 61.8
Zm00001eb323460 Zea mays HOM05D004209 ORTHO05D004970 5.6e-23 112.1 102 56.9
Lj3g0019605 Lotus japonicus HOM05D004209 ORTHO05D004970 7.3e-23 111.7 89 60.7
Pp3c3_2620 Physcomitrium patens HOM05D004209 ORTHO05D004970 7.3e-23 111.7 102 53.9
Sabra04G0017800 Salix brachista HOM05D004209 ORTHO05D004970 7.3e-23 111.7 102 55.9
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 7.3e-23 111.7 102 56.9
Gorai.009G175700 Gossypium raimondii HOM05D004209 ORTHO05D004970 9.6e-23 111.3 102 56.9
Manes.16G017000 Manihot esculenta HOM05D004209 ORTHO05D004970 9.6e-23 111.3 102 56.9
QL05p077152 Quercus lobata HOM05D004209 ORTHO05D004970 9.6e-23 111.3 102 56.9
Actinidia11832 Actinidia chinensis HOM05D004209 ORTHO05D004970 1.2e-22 110.9 102 56.9
Cc02_g11770 Coffea canephora HOM05D004209 ORTHO05D004970 1.2e-22 110.9 108 55.6
Haze_06687 Corylus avellana HOM05D004209 ORTHO05D004970 1.2e-22 110.9 102 57.8
Phvul.010G052300 Phaseolus vulgaris HOM05D004209 ORTHO05D004970 1.2e-22 110.9 89 60.7
QL93p0073_1246 Quercus lobata HOM05D004209 ORTHO05D004970 1.2e-22 110.9 102 56.9
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 1.2e-22 110.9 88 60.2
DCAR_028152 Daucus carota HOM05D004209 ORTHO05D004970 1.6e-22 110.5 89 58.4
unitig_21.g20230 Utricularia gibba HOM05D004209 ORTHO05D004970 1.6e-22 110.5 89 59.6
Duzib235G0889 Durio zibethinus HOM05D004209 ORTHO05D004970 2.1e-22 110.2 102 55.9
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 2.8e-22 109.8 89 59.6
Dinv17849 Davidia involucrata HOM05D004209 ORTHO05D004970 2.8e-22 109.8 102 53.9
FvH4_3g02920 Fragaria vesca HOM05D004209 ORTHO05D004970 2.8e-22 109.8 102 56.9
Hma1.2p1_1682F.1_g297320 Hydrangea macrophylla HOM05D004209 ORTHO05D004970 2.8e-22 109.8 102 55.9
Oeu030990.2 Olea europaea HOM05D004209 ORTHO05D004970 2.8e-22 109.8 89 60.7
Cfa016409 Carpinus fangiana HOM05D004209 ORTHO05D004970 3.6e-22 109.4 102 55.9
Lj2A275T36 Lonicera japonica HOM05D004209 ORTHO05D004970 4.7e-22 109.0 89 64.0
Hund23509 Selenicereus undatus HOM05D004209 ORTHO05D004970 4.7e-22 109.0 102 55.9
Zm00001eb106430 Zea mays HOM05D004209 ORTHO05D004970 4.7e-22 109.0 102 54.9
CiPaw.09G080300 Carya illinoinensis HOM05D004209 ORTHO05D004970 6.2e-22 108.6 102 56.9
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 8.1e-22 108.2 89 59.6
DCAR_024925 Daucus carota HOM05D004209 ORTHO05D004970 8.1e-22 108.2 89 59.6
Glyma.03G114600 Glycine max HOM05D004209 ORTHO05D004970 8.1e-22 108.2 89 59.6
Thecc.06G208500 Theobroma cacao HOM05D004209 ORTHO05D004970 8.1e-22 108.2 102 55.9
GSVIVG01002809001 Vitis vinifera HOM05D004209 ORTHO05D004970 8.1e-22 108.2 102 56.9
Eucgr.D00854 Eucalyptus grandis HOM05D004209 ORTHO05D004970 1.1e-21 107.8 89 59.6
Sabra11G0018800 Salix brachista HOM05D004209 ORTHO05D004970 1.1e-21 107.8 89 59.6
Sp7g19360 Schrenkiella parvula HOM05D004209 ORTHO05D004970 1.1e-21 107.8 89 58.4
VMungo0331G0173 Vigna mungo HOM05D004209 ORTHO05D004970 1.1e-21 107.8 89 58.4
AL7G32830 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 1.4e-21 107.5 85 60.0
AT4G21280 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 1.4e-21 107.5 85 60.0
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 1.4e-21 107.5 89 58.4
Lalb_Chr13g0290461 Lupinus albus HOM05D004209 ORTHO05D004970 1.4e-21 107.5 89 59.6
Actinidia36906 Actinidia chinensis HOM05D004209 ORTHO05D004970 2.4e-21 106.7 85 61.2
AT4G05180 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 2.4e-21 106.7 89 59.6
A01p12630 Brassica napus HOM05D004209 ORTHO05D004970 2.4e-21 106.7 89 58.4
BraA01t01206Z Brassica rapa HOM05D004209 ORTHO05D004970 2.4e-21 106.7 89 58.4
CDE05G2391 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 2.4e-21 106.7 91 58.2
FAN25G2308 Fragaria x ananassa HOM05D004209 ORTHO05D004970 2.4e-21 106.7 102 54.9
Glyma.07G112000 Glycine max HOM05D004209 ORTHO05D004970 2.4e-21 106.7 89 58.4
Nn1g06952 Nelumbo nucifera HOM05D004209 ORTHO05D004970 2.4e-21 106.7 90 57.8
Os07g0544800 Oryza sativa ssp. japonica HOM05D004209 ORTHO05D004970 2.4e-21 106.7 89 59.6
Pp3c13_6570 Physcomitrium patens HOM05D004209 ORTHO05D004970 2.4e-21 106.7 89 58.4
HPP92_000863 Vanilla planifolia HOM05D004209 ORTHO05D004970 2.4e-21 106.7 88 60.2
ATR1088G031 Amborella trichopoda HOM05D004209 ORTHO05D004970 3.1e-21 106.3 102 53.9
MSTRG.13163 Avicennia marina HOM05D004209 ORTHO05D004970 3.1e-21 106.3 102 54.9
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 3.1e-21 106.3 89 58.4
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 3.1e-21 106.3 102 53.9
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 3.1e-21 106.3 89 58.4
RcHm_v2.0_Chr5g0004501 Rosa chinensis HOM05D004209 ORTHO05D004970 3.1e-21 106.3 89 59.6
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 3.1e-21 106.3 89 58.4
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 3.1e-21 106.3 89 58.4
Sc24g0000090 Simmondsia chinensis HOM05D004209 ORTHO05D004970 3.1e-21 106.3 98 57.1
SGA_v2.0_scaffold49G18269 Striga asiatica HOM05D004209 ORTHO05D004970 3.1e-21 106.3 89 56.2
THA.LOC104813357 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 3.1e-21 106.3 102 52.9
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 4.0e-21 105.9 89 57.3
arahy.Tifrunner.gnm1.ann1.1B2UBR Arachis hypogaea HOM05D004209 ORTHO05D004970 4.0e-21 105.9 102 52.9
arahy.Tifrunner.gnm1.ann1.G1SUYP Arachis hypogaea HOM05D004209 ORTHO05D004970 4.0e-21 105.9 102 52.9
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 4.0e-21 105.9 89 58.4
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 4.0e-21 105.9 89 58.4
CANSAT56G4323 Cannabis sativa HOM05D004209 ORTHO05D004970 4.0e-21 105.9 89 57.3
CARHR227860 Cardamine hirsuta HOM05D004209 ORTHO05D004970 4.0e-21 105.9 89 56.2
Gohir.D06G125800 Gossypium hirsutum HOM05D004209 ORTHO05D004970 4.0e-21 105.9 98 55.1
Gohir.D10G016800 Gossypium hirsutum HOM05D004209 ORTHO05D004970 4.0e-21 105.9 102 52.9
Gorai.010G146500 Gossypium raimondii HOM05D004209 ORTHO05D004970 4.0e-21 105.9 98 55.1
Gorai.011G018700 Gossypium raimondii HOM05D004209 ORTHO05D004970 4.0e-21 105.9 102 52.9
SGA_v2.0_scaffold7G03893 Striga asiatica HOM05D004209 ORTHO05D004970 4.0e-21 105.9 89 58.4
EL10As6g23703 Beta vulgaris HOM05D004209 ORTHO05D004970 5.2e-21 105.5 90 58.9
Lalb_Chr07g0195561 Lupinus albus HOM05D004209 ORTHO05D004970 5.2e-21 105.5 89 58.4
MBI02_g29713_MAGBIO Magnolia biondii HOM05D004209 ORTHO05D004970 5.2e-21 105.5 102 53.9
Nn1g03715 Nelumbo nucifera HOM05D004209 ORTHO05D004970 5.2e-21 105.5 102 52.0
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 6.9e-21 105.1 89 57.3
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 6.9e-21 105.1 89 57.3
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 6.9e-21 105.1 89 57.3
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 6.9e-21 105.1 89 57.3
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 6.9e-21 105.1 89 57.3
Sc24g0000590 Simmondsia chinensis HOM05D004209 ORTHO05D004970 6.9e-21 105.1 98 56.1
HPP92_000866 Vanilla planifolia HOM05D004209 ORTHO05D004970 6.9e-21 105.1 88 59.1
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 8.9e-21 104.8 89 55.1
BolC9t56091H Brassica oleracea HOM05D004209 ORTHO05D004970 8.9e-21 104.8 89 58.4
Cpa.g.sc139.72 Carica papaya HOM05D004209 ORTHO05D004970 8.9e-21 104.8 102 53.9
FAN21G1744 Fragaria x ananassa HOM05D004209 ORTHO05D004970 8.9e-21 104.8 89 58.4
Potri.011G031300 Populus trichocarpa HOM05D004209 ORTHO05D004970 8.9e-21 104.8 98 56.1
PGR004G2512 Punica granatum HOM05D004209 ORTHO05D004970 1.2e-20 104.4 102 52.9
CDE11G0355 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 1.5e-20 104.0 91 56.0
Ca_14052_v3 Cicer arietinum L. HOM05D004209 ORTHO05D004970 1.5e-20 104.0 102 51.0
Gohir.A10G016700 Gossypium hirsutum HOM05D004209 ORTHO05D004970 1.5e-20 104.0 102 52.9
Hund21317 Selenicereus undatus HOM05D004209 ORTHO05D004970 1.5e-20 104.0 95 53.7
HanXRQChr11g0339031 Helianthus annuus HOM05D004209 ORTHO05D004970 2.0e-20 103.6 88 56.8
Prupe.4G029300 Prunus persica HOM05D004209 ORTHO05D004970 2.0e-20 103.6 102 53.9
MD10G1311700 Malus domestica HOM05D004209 ORTHO05D004970 2.6e-20 103.2 102 52.0
Ah.09g237150 Amaranthus hybridus HOM05D004209 ORTHO05D004970 3.4e-20 102.8 82 59.8
Medtr8g005175 Medicago truncatula HOM05D004209 ORTHO05D004970 3.4e-20 102.8 89 52.8
Nitab4.5_0003738g0060 Nicotiana tabacum HOM05D004209 ORTHO05D004970 3.4e-20 102.8 89 56.2
TPR.G33125 Trifolium pratense HOM05D004209 ORTHO05D004970 3.4e-20 102.8 89 55.1
CARHR252370 Cardamine hirsuta HOM05D004209 ORTHO05D004970 4.4e-20 102.4 89 57.3
HanXRQChr01g0004411 Helianthus annuus HOM05D004209 ORTHO05D004970 4.4e-20 102.4 88 55.7
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 4.4e-20 102.4 88 56.8
Carub.0006s3313 Capsella rubella HOM05D004209 ORTHO05D004970 7.6e-20 101.7 89 55.1
AUR62014619 Chenopodium quinoa HOM05D004209 ORTHO05D004970 7.6e-20 101.7 90 57.8
AUR62044485 Chenopodium quinoa HOM05D004209 ORTHO05D004970 7.6e-20 101.7 90 57.8
ECA248G1673 Erigeron canadensis HOM05D004209 ORTHO05D004970 7.6e-20 101.7 88 54.5
Gohir.A06G121600 Gossypium hirsutum HOM05D004209 ORTHO05D004970 7.6e-20 101.7 98 53.1
Nitab4.5_0002345g0070 Nicotiana tabacum HOM05D004209 ORTHO05D004970 7.6e-20 101.7 89 55.1
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.3e-19 100.9 89 55.1
Lsat_1_v5_gn_1_123241 Lactuca sativa HOM05D004209 ORTHO05D004970 1.3e-19 100.9 88 54.5
MD05G1336200 Malus domestica HOM05D004209 ORTHO05D004970 1.3e-19 100.9 102 52.9
Psat4g225520 Pisum sativum HOM05D004209 ORTHO05D004970 1.3e-19 100.9 89 53.9
Sed0006596 Sechium edule HOM05D004209 ORTHO05D004970 1.3e-19 100.9 89 56.2
CsaV3_1G011330 Cucumis sativus L. HOM05D004209 ORTHO05D004970 2.9e-19 99.8 89 55.1
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 2.9e-19 99.8 89 53.9
Nitab4.5_0006475g0030 Nicotiana tabacum HOM05D004209 ORTHO05D004970 3.8e-19 99.4 89 53.9
AUR62012582 Chenopodium quinoa HOM05D004209 ORTHO05D004970 4.9e-19 99.0 90 55.6
MELO3C002510.2 Cucumis melo HOM05D004209 ORTHO05D004970 4.9e-19 99.0 89 55.1
Migut.M01264 Erythranthe guttata HOM05D004209 ORTHO05D004970 4.9e-19 99.0 89 53.9
ClCG03G005130 Citrullus lanatus HOM05D004209 ORTHO05D004970 6.4e-19 98.6 89 55.1
PGSC0003DMG400021727 Solanum tuberosum HOM05D004209 ORTHO05D004970 1.1e-18 97.8 89 52.8
Solyc02g079950.3 Solanum lycopersicum HOM05D004209 ORTHO05D004970 2.4e-18 96.7 89 52.8
Sopen02g024700 Solanum pennellii HOM05D004209 ORTHO05D004970 2.4e-18 96.7 89 52.8
Ah.14g088480 Amaranthus hybridus HOM05D004209 ORTHO05D004970 4.2e-18 95.9 82 54.9
CAN.G424.102 Capsicum annuum HOM05D004209 ORTHO05D004970 7.1e-18 95.1 89 51.7
CBR_g33939 Chara braunii HOM05D004209 ORTHO05D004970 1.3e-14 84.3 88 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5662 Anthoceros agrestis HOM05D004209 ORTHO05D004970 1.4e-13 80.9 90 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5113 Anthoceros agrestis HOM05D004209 ORTHO05D004970 3.1e-13 79.7 89 49.4
Peaxi162Scf00082g01216 Petunia axillaris HOM05D004209 ORTHO05D004970 2.6e-12 76.6 64 56.2
Mapoly0115s0030 Marchantia polymorpha HOM05D004209 ORTHO05D004970 1.7e-11 73.9 90 43.3
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 8.7e-08 61.6 84 39.3
ATR1088G002 Amborella trichopoda HOM05D005228 ORTHO05D006208 4.3e-07 59.3 101 32.7
Dinv16671 Davidia involucrata HOM05D007276 ORTHO05D009222 5.6e-07 58.9 88 31.8
Atru.chr11.1756 Acer truncatum HOM05D007276 ORTHO05D009222 9.6e-07 58.2 88 34.1
Aqoxy3G00485 Aquilegia oxysepala HOM05D007276 ORTHO05D009222 9.6e-07 58.2 87 33.3
Ca_04824_v3 Cicer arietinum L. HOM05D007276 ORTHO05D009222 1.6e-06 57.4 99 31.3
Medtr5g041910 Medicago truncatula HOM05D007276 ORTHO05D009222 1.6e-06 57.4 87 32.2
Rhsim02G0115200 Rhododendron simsii HOM05D004209 ORTHO05D004970 1.6e-06 57.4 102 39.2
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 2.1e-06 57.0 63 42.9
Thecc.02G343000 Theobroma cacao HOM05D007276 ORTHO05D009222 2.1e-06 57.0 87 32.2
TPR.G34704 Trifolium pratense HOM05D007276 ORTHO05D009222 2.8e-06 56.6 87 33.3
Gohir.D13G076600 Gossypium hirsutum HOM05D007276 ORTHO05D009222 3.6e-06 56.2 87 32.2
ATR0564G040 Amborella trichopoda HOM05D007276 ORTHO05D009222 4.8e-06 55.8 82 31.7
CSS0029134 Camellia sinensis var. sinensis HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 31.0
CSS0045447 Camellia sinensis var. sinensis HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 31.0
CDE07G1248 Ceratophyllum demersum HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 31.0
Gorai.013G087300 Gossypium raimondii HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 32.2
PSO063G4223 Papaver somniferum HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 31.0
PSO832G3155 Papaver somniferum HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 31.0
Psat2g116600 Pisum sativum HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 33.3
TWI31G0118 Tripterygium wilfordii HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 33.3
GSVIVG01019955001 Vitis vinifera HOM05D007276 ORTHO05D009222 4.8e-06 55.8 87 31.0
Cpa.g.sc350.6 Carica papaya HOM05D007276 ORTHO05D009222 6.2e-06 55.5 87 29.9
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 6.2e-06 55.5 79 35.4
Lj2g0006863 Lotus japonicus HOM05D007276 ORTHO05D009222 6.2e-06 55.5 87 31.0
Lalb_Chr10g0098421 Lupinus albus HOM05D007276 ORTHO05D009222 6.2e-06 55.5 87 31.0
Nn1g03713 Nelumbo nucifera HOM05D005228 ORTHO05D006208 6.2e-06 55.5 87 33.3


User provided reference genes

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