Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 0.0e+00 1760.0 861 100.0
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 4.9e-309 1064.3 865 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.8e-288 995.3 866 56.2
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 9.4e-284 980.3 866 54.8
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 2.1e-283 979.2 865 55.1
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 4.6e-283 978.0 866 53.9
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 1.8e-282 976.1 869 54.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 5.1e-282 974.5 870 54.3
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 3.3e-281 971.8 861 54.1
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 5.7e-281 971.1 867 54.6
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 5.7e-281 971.1 864 53.8
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.7e-280 969.5 861 53.8
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.2e-280 969.1 861 53.7
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 4.8e-280 968.0 868 53.3
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 8.2e-280 967.2 864 53.6
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 3.1e-279 965.3 867 54.1
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 3.1e-279 965.3 869 53.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 4.1e-279 964.9 868 53.2
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 4.1e-279 964.9 874 52.6
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 1.5e-278 963.0 863 53.7
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 2.0e-278 962.6 868 54.1
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 2.0e-278 962.6 863 53.8
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 2.6e-278 962.2 865 54.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 2.6e-278 962.2 874 52.6
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 2.6e-278 962.2 872 53.1
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 2.6e-278 962.2 867 54.2
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 2.6e-278 962.2 861 53.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 5.9e-278 961.1 863 52.8
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 7.7e-278 960.7 870 53.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 1.0e-277 960.3 871 53.5
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 1.7e-277 959.5 865 53.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 2.2e-277 959.1 880 53.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.2e-277 959.1 867 54.0
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 2.9e-277 958.7 875 53.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 3.8e-277 958.4 864 53.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 1.4e-276 956.4 864 53.5
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 1.9e-276 956.1 867 54.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.5e-276 955.7 883 52.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 3.2e-276 955.3 868 53.8
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 5.5e-276 954.5 873 52.3
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 7.2e-276 954.1 869 53.2
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 1.6e-275 953.0 864 53.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 2.7e-275 952.2 864 53.5
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 4.7e-275 951.4 875 53.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 4.7e-275 951.4 864 52.9
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 1.8e-274 949.5 871 53.0
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 2.3e-274 949.1 888 52.0
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 2.3e-274 949.1 862 53.1
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 2.3e-274 949.1 863 53.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 2.3e-274 949.1 866 53.7
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 3.9e-274 948.3 875 52.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 6.7e-274 947.6 867 53.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 8.8e-274 947.2 873 53.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 2.0e-273 946.0 869 52.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 2.6e-273 945.7 864 53.0
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 3.3e-273 945.3 871 52.0
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 4.4e-273 944.9 862 52.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 5.7e-273 944.5 864 52.5
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 7.4e-273 944.1 867 52.5
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 9.7e-273 943.7 874 51.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 9.7e-273 943.7 860 54.5
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 2.2e-272 942.6 868 52.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 6.3e-272 941.0 865 52.0
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 8.2e-272 940.6 873 52.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.1e-271 940.3 867 52.4
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 1.4e-271 939.9 873 53.3
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 2.4e-271 939.1 879 52.1
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 2.4e-271 939.1 873 51.3
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 9.1e-271 937.2 872 52.3
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 1.2e-270 936.8 869 52.9
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 1.2e-270 936.8 871 52.0
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 1.5e-270 936.4 869 52.5
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 1.5e-270 936.4 869 52.9
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 1.5e-270 936.4 869 52.9
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 2.0e-270 936.0 874 52.6
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 2.6e-270 935.6 866 52.8
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 3.5e-270 935.3 874 52.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.5e-270 935.3 881 51.9
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 3.5e-270 935.3 869 52.7
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 2.2e-269 932.6 874 51.5
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 2.9e-269 932.2 871 52.6
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 3.2e-268 928.7 867 51.9
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 3.6e-267 925.2 866 53.3
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 8.0e-267 924.1 869 52.0
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 2.2e-264 916.0 867 51.4
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 4.8e-264 914.8 867 51.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 6.3e-264 914.4 861 51.2
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 1.1e-263 913.7 868 51.7
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 1.4e-263 913.3 868 50.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 3.1e-263 912.1 865 51.3
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 4.5e-262 908.3 874 52.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 1.3e-261 906.7 862 50.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 2.1e-259 899.4 830 53.3
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 2.1e-259 899.4 849 51.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 5.9e-254 881.3 862 49.8
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 4.4e-241 838.6 860 50.3
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.4e-231 807.0 695 55.3
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.4e-223 780.4 749 51.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.9e-223 780.0 653 56.0
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.9e-220 770.0 696 53.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 2.3e-218 763.1 857 46.4
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 9.9e-209 731.1 760 48.2
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 3.3e-127 460.3 473 49.7
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.2e-122 443.7 395 53.2
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.9e-120 436.8 466 50.0
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.6e-86 325.1 354 46.6
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 4.8e-62 243.8 168 66.7
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 6.1e-57 226.9 204 53.4
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.7e-49 201.4 306 41.2
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.9e-36 157.1 169 46.7
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.9e-34 152.1 159 50.3
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 8.0e-33 146.7 107 61.7
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.3e-31 141.4 199 39.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.4e-21 107.5 85 56.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.5e-18 99.4 87 55.2
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.9e-18 99.0 90 54.4
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.6e-17 95.9 68 64.7
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.6e-15 88.6 149 36.9
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 7.5e-15 87.0 108 40.7
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 2.2e-14 85.5 62 53.2
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.7e-14 84.7 203 27.6
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.6e-12 79.3 109 40.4
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.0e-11 76.6 239 23.8
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.6e-11 73.6 314 21.7
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.5e-10 72.8 294 25.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.9e-10 72.4 308 23.4
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 2.5e-10 72.0 298 24.2
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 7.3e-10 70.5 306 24.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.6e-09 69.3 216 26.4
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.8e-09 68.6 240 21.7
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.8e-08 65.9 295 21.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.3e-08 65.5 298 24.2
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.9e-08 63.5 209 25.8
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.4e-07 61.6 220 25.9
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 5.7e-07 60.8 287 24.0
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.2e-06 58.9 202 25.7
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.9e-06 58.5 159 25.8
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 4.9e-06 57.8 305 24.6


User provided reference genes

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