Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_1990 Physcomitrium patens HOM05D016040 ORTHO05D005718 2.2e-124 449.1 255 100.0
Pp3c25_14480 Physcomitrium patens HOM05D016040 ORTHO05D005718 8.0e-66 254.6 297 55.2
Pp3c6_4360 Physcomitrium patens HOM05D016040 ORTHO05D005718 1.5e-27 127.5 117 53.8
Pp3c5_25220 Physcomitrium patens HOM05D016040 ORTHO05D005718 4.8e-26 122.5 104 53.8
Pp3c16_19750 Physcomitrium patens HOM05D016040 ORTHO05D005718 1.2e-24 117.9 119 49.6
Pp3c25_11150 Physcomitrium patens HOM05D016040 ORTHO05D005718 4.5e-24 115.9 125 47.2
Pp3c6_5260 Physcomitrium patens HOM05D011764 ORTHO05D017075 8.2e-10 68.6 121 33.1
Pp3c19_20160 Physcomitrium patens HOM05D016040 ORTHO05D317457 1.4e-09 67.8 70 52.9
Pp3c22_16710 Physcomitrium patens HOM05D011764 ORTHO05D308383 1.8e-09 67.4 64 53.1
Oeu022024.1 Olea europaea HOM05D000262 ORTHO05D005718 2.4e-09 67.0 95 35.8
Pp3c18_12580 Physcomitrium patens HOM05D016040 ORTHO05D319258 5.3e-09 65.9 96 41.7
Pp3c18_14890 Physcomitrium patens HOM05D000262 ORTHO05D316388 1.5e-08 64.3 64 46.9
Pp3c25_11290 Physcomitrium patens HOM05D011764 ORTHO05D017075 2.0e-08 63.9 125 32.0
Gohir.A08G108700 Gossypium hirsutum HOM05D000262 ORTHO05D005718 3.4e-08 63.2 76 43.4
Gohir.D08G121400 Gossypium hirsutum HOM05D000262 ORTHO05D005718 3.4e-08 63.2 76 43.4
Gorai.004G128100 Gossypium raimondii HOM05D000262 ORTHO05D005718 3.4e-08 63.2 76 43.4
Gorai.006G204300 Gossypium raimondii HOM05D000262 ORTHO05D005718 3.4e-08 63.2 92 41.3
Prupe.5G135200 Prunus persica HOM05D000262 ORTHO05D005718 3.4e-08 63.2 98 35.7
Pp3c21_15220 Physcomitrium patens HOM05D000262 ORTHO05D316196 4.5e-08 62.8 64 46.9
Pp3c9_9100 Physcomitrium patens HOM05D011764 ORTHO05D310360 4.5e-08 62.8 66 50.0
Gohir.D09G182200 Gossypium hirsutum HOM05D000262 ORTHO05D005718 5.8e-08 62.4 81 42.0
Gohir.D12G243800 Gossypium hirsutum HOM05D000262 ORTHO05D005718 7.6e-08 62.0 74 43.2
Gorai.008G261300 Gossypium raimondii HOM05D000262 ORTHO05D005718 7.6e-08 62.0 90 38.9
Pp3c3_17970 Physcomitrium patens HOM05D015359 ORTHO05D017075 2.2e-07 60.5 63 46.0
Pp3c6_12850 Physcomitrium patens HOM05D015359 ORTHO05D050340 2.2e-07 60.5 65 41.5
Sed0003133 Sechium edule HOM05D000262 ORTHO05D005718 2.2e-07 60.5 74 40.5
Pp3c18_12600 Physcomitrium patens HOM05D016040 ORTHO05D314096 2.9e-07 60.1 111 37.8
Pp3c25_11400 Physcomitrium patens HOM05D015359 ORTHO05D017075 2.9e-07 60.1 66 47.0
Thecc.03G215500 Theobroma cacao HOM05D000262 ORTHO05D005718 2.9e-07 60.1 74 40.5
Mapoly0180s0012 Marchantia polymorpha HOM05D010122 ORTHO05D013334 3.8e-07 59.7 105 32.4
MSTRG.24881 Avicennia marina HOM05D000262 ORTHO05D005718 5.0e-07 59.3 74 40.5
Gohir.A09G187400 Gossypium hirsutum HOM05D000262 ORTHO05D005718 5.0e-07 59.3 84 41.7
HanXRQChr14g0462111 Helianthus annuus HOM05D000262 ORTHO05D005718 5.0e-07 59.3 94 35.1
Potri.001G452400 Populus trichocarpa HOM05D000262 ORTHO05D005718 5.0e-07 59.3 119 31.1
SMO367G0667 Selaginella moellendorffii HOM05D000262 ORTHO05D000300 5.0e-07 59.3 68 42.6
Duzib068G0734 Durio zibethinus HOM05D000262 ORTHO05D005718 6.5e-07 58.9 74 40.5
Manes.02G000100 Manihot esculenta HOM05D000262 ORTHO05D005718 6.5e-07 58.9 81 38.3
Sc22g0004650 Simmondsia chinensis HOM05D000262 ORTHO05D005718 6.5e-07 58.9 74 39.2
Pp3c25_11210 Physcomitrium patens HOM05D011764 ORTHO05D026047 8.4e-07 58.5 61 49.2
TWI81G0277 Tripterygium wilfordii HOM05D000262 ORTHO05D005718 8.4e-07 58.5 74 37.8
unitig_62.g23262 Utricularia gibba HOM05D000262 ORTHO05D005718 8.4e-07 58.5 74 40.5
CiPaw.12G074400 Carya illinoinensis HOM05D000262 ORTHO05D005718 1.1e-06 58.2 74 37.8
Lj2A150T33 Lonicera japonica HOM05D000262 ORTHO05D005718 1.1e-06 58.2 77 37.7
Manes.01G000341 Manihot esculenta HOM05D000262 ORTHO05D005718 1.1e-06 58.2 82 37.8
arahy.Tifrunner.gnm1.ann1.PE90UA Arachis hypogaea HOM05D000262 ORTHO05D005718 1.4e-06 57.8 74 37.8
MSTRG.13691 Avicennia marina HOM05D000262 ORTHO05D005718 1.4e-06 57.8 74 39.2
COL.COLO4_10846 Corchorus olitorius HOM05D000262 ORTHO05D005718 1.4e-06 57.8 69 39.1
MELO3C005805.2 Cucumis melo HOM05D000262 ORTHO05D005718 1.4e-06 57.8 74 40.5
Nn1g05265 Nelumbo nucifera HOM05D000262 ORTHO05D005718 1.4e-06 57.8 74 40.5
Peaxi162Scf00117g00211 Petunia axillaris HOM05D000262 ORTHO05D005718 1.4e-06 57.8 74 36.5
Pp3c25_11360 Physcomitrium patens HOM05D014505 ORTHO05D030131 1.4e-06 57.8 103 33.0
PGR042G3739 Punica granatum HOM05D000262 ORTHO05D005718 1.4e-06 57.8 81 38.3
Sc22g0000100 Simmondsia chinensis HOM05D000262 ORTHO05D005718 1.4e-06 57.8 104 34.6
Actinidia22231 Actinidia chinensis HOM05D000262 ORTHO05D005718 1.9e-06 57.4 74 39.2
Aqoxy3G01603 Aquilegia oxysepala HOM05D000473 ORTHO05D001433 1.9e-06 57.4 85 42.4
Lsat_1_v5_gn_3_13421 Lactuca sativa HOM05D000262 ORTHO05D005718 1.9e-06 57.4 81 38.3
Mapoly0180s0019 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.9e-06 57.4 105 30.5
Mapoly0180s0021 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.9e-06 57.4 104 30.8
CAN.G1427.7 Capsicum annuum HOM05D000262 ORTHO05D005718 2.5e-06 57.0 74 37.8
AUR62007086 Chenopodium quinoa HOM05D000262 ORTHO05D005718 2.5e-06 57.0 81 37.0
AUR62019949 Chenopodium quinoa HOM05D000262 ORTHO05D005718 2.5e-06 57.0 81 37.0
Mapoly0180s0014 Marchantia polymorpha HOM05D010122 ORTHO05D013334 2.5e-06 57.0 104 30.8
Nitab4.5_0000450g0070 Nicotiana tabacum HOM05D000262 ORTHO05D005718 2.5e-06 57.0 72 38.9
Nitab4.5_0006317g0040 Nicotiana tabacum HOM05D000262 ORTHO05D005718 2.5e-06 57.0 74 36.5
Sp6g07000 Schrenkiella parvula HOM05D000262 ORTHO05D005718 2.5e-06 57.0 74 39.2
Sopen12g024310 Solanum pennellii HOM05D000262 ORTHO05D005718 2.5e-06 57.0 74 37.8
TAR374G1577 Trochodendron aralioides HOM05D000262 ORTHO05D005718 2.5e-06 57.0 81 37.0
GSVIVG01019700001 Vitis vinifera HOM05D000262 ORTHO05D005718 2.5e-06 57.0 74 39.2
Aqoxy5G04359 Aquilegia oxysepala HOM05D000262 ORTHO05D005718 3.2e-06 56.6 75 38.7
EL10Ac5g12392 Beta vulgaris HOM05D000262 ORTHO05D005718 3.2e-06 56.6 74 36.5
Carub.0008s0837 Capsella rubella HOM05D000262 ORTHO05D005718 3.2e-06 56.6 76 38.2
CAN.G390.33 Capsicum annuum HOM05D000262 ORTHO05D005718 3.2e-06 56.6 74 37.8
Cc08_g17060 Coffea canephora HOM05D000262 ORTHO05D005718 3.2e-06 56.6 84 36.9
Haze_09218 Corylus avellana HOM05D000262 ORTHO05D005718 3.2e-06 56.6 74 36.5
Duzib205G0444 Durio zibethinus HOM05D000262 ORTHO05D005718 3.2e-06 56.6 82 36.6
Eucgr.E01094 Eucalyptus grandis HOM05D000262 ORTHO05D005718 3.2e-06 56.6 81 38.3
PGSC0003DMG400030875 Solanum tuberosum HOM05D000262 ORTHO05D005718 3.2e-06 56.6 78 39.7
Aa31LG9G11590 Aethionema arabicum HOM05D000262 ORTHO05D005718 4.2e-06 56.2 74 39.2
CANSAT21G0292 Cannabis sativa HOM05D000262 ORTHO05D005718 4.2e-06 56.2 81 37.0
Cfa011886 Carpinus fangiana HOM05D000262 ORTHO05D005718 4.2e-06 56.2 74 36.5
CsaV3_5G001440 Cucumis sativus L. HOM05D000262 ORTHO05D005718 4.2e-06 56.2 74 39.2
FvH4_5g10380 Fragaria vesca HOM05D000262 ORTHO05D005718 4.2e-06 56.2 72 36.1
FAN04G2412 Fragaria x ananassa HOM05D000262 ORTHO05D005718 4.2e-06 56.2 72 36.1
FAN13G3243 Fragaria x ananassa HOM05D000262 ORTHO05D005718 4.2e-06 56.2 72 36.1
FAN18G1562 Fragaria x ananassa HOM05D000262 ORTHO05D005718 4.2e-06 56.2 72 36.1
Rhsim02G0254800 Rhododendron simsii HOM05D000262 ORTHO05D005718 4.2e-06 56.2 72 37.5
PGSC0003DMG400005000 Solanum tuberosum HOM05D000262 ORTHO05D005718 4.2e-06 56.2 74 36.5
CiPaw.11G108600 Carya illinoinensis HOM05D000262 ORTHO05D005718 5.5e-06 55.8 81 35.8
HanXRQChr17g0534061 Helianthus annuus HOM05D000262 ORTHO05D005718 5.5e-06 55.8 83 38.6
Mapoly0025s0037 Marchantia polymorpha HOM05D025773 ORTHO05D000300 5.5e-06 55.8 64 37.5
Mapoly0180s0018 Marchantia polymorpha HOM05D010122 ORTHO05D013334 5.5e-06 55.8 104 29.8
Medtr1g078090 Medicago truncatula HOM05D000262 ORTHO05D005718 5.5e-06 55.8 74 36.5
Nn3g18768 Nelumbo nucifera HOM05D000262 ORTHO05D005718 5.5e-06 55.8 82 36.6
Pp3c24_5200 Physcomitrium patens HOM05D011764 ORTHO05D318183 5.5e-06 55.8 63 39.7
Dinv18782 Davidia involucrata HOM05D000262 ORTHO05D005718 7.2e-06 55.5 74 37.8
Thhalv10027957m.g Eutrema salsugineum HOM05D000262 ORTHO05D005718 7.2e-06 55.5 76 38.2
Thhalv10029456m.g Eutrema salsugineum HOM05D000262 ORTHO05D005718 7.2e-06 55.5 74 37.8
Pp3c5_25070 Physcomitrium patens HOM05D015359 ORTHO05D017075 7.2e-06 55.5 63 41.3
Sabra16G0305600 Salix brachista HOM05D000262 ORTHO05D005718 7.2e-06 55.5 81 35.8
Sp7g00010 Schrenkiella parvula HOM05D000262 ORTHO05D005718 7.2e-06 55.5 76 38.2
Sopen08g024520 Solanum pennellii HOM05D000262 ORTHO05D005718 7.2e-06 55.5 74 36.5
vmacro11476 Vaccinium macrocarpon HOM05D000262 ORTHO05D005718 7.2e-06 55.5 73 37.0
AL3G51430 Arabidopsis lyrata HOM05D000262 ORTHO05D005718 9.3e-06 55.1 69 36.2
BcaB01g01477 Brassica carinata HOM05D000262 ORTHO05D005718 9.3e-06 55.1 74 37.8
BcaB02g07861 Brassica carinata HOM05D000262 ORTHO05D005718 9.3e-06 55.1 76 36.8
BcaC04g21039 Brassica carinata HOM05D000262 ORTHO05D005718 9.3e-06 55.1 74 37.8
A09p28680 Brassica napus HOM05D000262 ORTHO05D005718 9.3e-06 55.1 74 37.8
C09p36410 Brassica napus HOM05D000262 ORTHO05D005718 9.3e-06 55.1 74 37.8
CARHR213490 Cardamine hirsuta HOM05D000262 ORTHO05D005718 9.3e-06 55.1 76 36.8
Cpa.g.sc37.110 Carica papaya HOM05D000262 ORTHO05D005718 9.3e-06 55.1 81 35.8
Glyma.10G171800 Glycine max HOM05D000262 ORTHO05D005718 9.3e-06 55.1 81 37.0
Phvul.007G117600 Phaseolus vulgaris HOM05D000262 ORTHO05D005718 9.3e-06 55.1 81 37.0
Pp3c6_3870 Physcomitrium patens HOM05D015359 ORTHO05D017075 9.3e-06 55.1 63 41.3
THA.LOC104815464 Tarenaya hassleriana HOM05D000262 ORTHO05D005718 9.3e-06 55.1 74 37.8


User provided reference genes

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