Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.3e-59 231.5 115 100.0
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 3.8e-39 164.9 112 67.0
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.5e-35 152.9 111 61.3
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 6.2e-34 147.5 112 58.9
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.8e-33 146.0 112 58.9
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.8e-33 146.0 112 55.4
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 3.1e-33 145.2 112 56.2
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.0e-33 144.8 112 57.1
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 4.0e-33 144.8 112 58.0
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.0e-33 144.8 113 57.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.0e-33 144.8 113 57.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.0e-33 144.8 112 58.0
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.0e-33 144.8 111 58.6
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.3e-33 144.4 113 57.5
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.3e-33 144.4 113 57.5
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 5.3e-33 144.4 112 56.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 5.3e-33 144.4 113 56.6
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 5.3e-33 144.4 112 57.1
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 6.9e-33 144.1 113 55.8
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 9.0e-33 143.7 113 55.8
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 9.0e-33 143.7 112 57.1
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.2e-32 143.3 112 57.1
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-32 143.3 112 57.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.2e-32 143.3 112 56.2
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.2e-32 143.3 112 56.2
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.5e-32 142.9 112 56.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 2.0e-32 142.5 112 55.4
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.0e-32 142.5 112 56.2
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.0e-32 142.5 112 56.2
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.6e-32 142.1 114 54.4
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.6e-32 142.1 114 56.1
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 3.4e-32 141.7 113 54.9
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.4e-32 141.7 113 56.6
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.4e-32 141.7 111 58.6
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.5e-32 141.4 113 55.8
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.5e-32 141.4 111 56.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-32 141.0 112 60.7
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 5.8e-32 141.0 112 57.1
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 5.8e-32 141.0 112 57.1
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.8e-32 141.0 115 54.8
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 5.8e-32 141.0 113 54.0
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 5.8e-32 141.0 112 55.4
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 7.6e-32 140.6 113 54.9
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 7.6e-32 140.6 111 55.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.6e-32 140.6 113 54.9
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 7.6e-32 140.6 112 55.4
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 7.6e-32 140.6 113 54.0
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.0e-31 140.2 112 54.5
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.0e-31 140.2 112 56.2
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.0e-31 140.2 110 54.5
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.0e-31 140.2 113 54.9
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.0e-31 140.2 112 55.4
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.3e-31 139.8 111 55.9
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.3e-31 139.8 113 54.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-31 139.4 113 54.0
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-31 139.4 113 54.0
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-31 139.4 113 54.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.7e-31 139.4 113 53.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.7e-31 139.4 107 56.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.7e-31 139.4 111 55.9
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 2.2e-31 139.0 113 54.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 2.2e-31 139.0 113 54.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 2.2e-31 139.0 113 54.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.2e-31 139.0 113 54.0
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.2e-31 139.0 113 54.9
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 2.2e-31 139.0 107 55.1
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.2e-31 139.0 112 54.5
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.2e-31 139.0 112 54.5
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.2e-31 139.0 112 54.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.9e-31 138.7 112 53.6
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-31 138.7 113 54.0
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-31 138.7 113 54.0
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.9e-31 138.7 113 54.0
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.9e-31 138.7 113 54.0
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 2.9e-31 138.7 112 55.4
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.9e-31 138.7 112 55.4
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.9e-31 138.7 112 55.4
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 2.9e-31 138.7 115 51.3
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.8e-31 138.3 113 54.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 3.8e-31 138.3 113 53.1
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.8e-31 138.3 113 54.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.8e-31 138.3 113 54.9
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 3.8e-31 138.3 106 57.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 3.8e-31 138.3 113 54.0
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.8e-31 138.3 111 53.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 3.8e-31 138.3 114 55.3
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.8e-31 138.3 112 52.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 4.9e-31 137.9 113 54.0
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 4.9e-31 137.9 111 53.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 6.5e-31 137.5 113 54.0
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.5e-31 137.5 113 52.2
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 6.5e-31 137.5 109 55.0
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 6.5e-31 137.5 111 53.2
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 6.5e-31 137.5 111 54.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.1e-30 136.7 113 52.2
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.1e-30 136.7 113 52.2
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.4e-30 136.3 113 53.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 4.2e-30 134.8 112 52.7
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 5.5e-30 134.4 112 49.1
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 7.1e-30 134.0 118 52.5
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.7e-29 132.1 112 53.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.7e-29 132.1 114 52.6
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.5e-29 131.7 109 55.0
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 4.6e-29 131.3 103 54.4
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 4.6e-29 131.3 112 51.8
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 6.0e-29 131.0 133 47.4
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 7.9e-29 130.6 99 59.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.0e-28 130.2 99 59.6
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.0e-28 130.2 99 59.6
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 3.9e-28 128.3 105 53.3
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 5.1e-28 127.9 99 56.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 5.1e-28 127.9 107 53.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 5.1e-28 127.9 101 54.5
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 6.7e-28 127.5 113 51.3
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.5e-27 126.3 99 56.6
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.5e-27 125.6 99 57.6
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 9.6e-27 123.6 131 45.0
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 9.6e-27 123.6 99 55.6
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.6e-26 122.9 95 60.0
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-26 122.9 113 52.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 2.1e-26 122.5 148 41.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.8e-25 119.4 103 51.5
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-25 119.0 100 51.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 4.1e-25 118.2 100 53.0
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.3e-25 117.9 178 37.1
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.6e-24 115.5 99 51.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 5.0e-23 111.3 96 55.2
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.9e-22 109.4 81 60.5
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.5e-22 109.0 112 47.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 9.7e-19 97.1 114 43.0
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.8e-18 95.5 82 51.2
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.4e-17 92.4 113 40.7
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 5.0e-15 84.7 57 59.6
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.9e-14 82.8 60 58.3
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.5e-14 82.4 56 60.7
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 5.5e-14 81.3 57 56.1
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.0e-12 77.0 57 56.1
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 3.0e-12 75.5 58 56.9
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.8e-10 68.9 81 40.7
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 8.2e-10 67.4 89 38.2
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 4.1e-09 65.1 55 56.4
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 4.5e-08 61.6 55 49.1
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.2e-07 59.3 84 34.5
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.9e-07 58.9 52 50.0
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-06 56.2 55 43.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.9e-06 56.2 53 52.8


User provided reference genes

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