Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.4e-50 202.6 98 100.0
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 6.9e-34 147.1 98 70.4
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 6.9e-34 147.1 98 69.4
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 9.1e-34 146.7 98 68.4
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.2e-33 146.4 98 68.4
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.5e-33 146.0 98 69.4
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 2.6e-33 145.2 98 69.4
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 2.6e-33 145.2 98 67.3
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 2.6e-33 145.2 98 69.4
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 2.6e-33 145.2 98 68.4
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 3.4e-33 144.8 98 68.4
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 5.9e-33 144.1 98 65.3
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 5.9e-33 144.1 98 66.3
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 5.9e-33 144.1 98 67.3
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 7.7e-33 143.7 98 68.4
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 7.7e-33 143.7 98 67.3
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 7.7e-33 143.7 98 67.3
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.0e-32 143.3 98 67.3
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.0e-32 143.3 98 67.3
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 1.3e-32 142.9 98 67.3
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.3e-32 142.9 98 67.3
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.3e-32 142.9 98 67.3
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.7e-32 142.5 98 67.3
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.7e-32 142.5 97 66.0
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 2.2e-32 142.1 96 66.7
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 2.2e-32 142.1 98 67.3
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 2.2e-32 142.1 98 66.3
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 2.9e-32 141.7 98 67.3
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 2.9e-32 141.7 98 67.3
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 3.8e-32 141.4 98 66.3
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 5.0e-32 141.0 96 68.8
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 5.0e-32 141.0 98 66.3
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 5.0e-32 141.0 98 66.3
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 5.0e-32 141.0 98 66.3
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 5.0e-32 141.0 98 66.3
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 6.5e-32 140.6 98 66.3
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 6.5e-32 140.6 98 65.3
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 6.5e-32 140.6 98 65.3
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 6.5e-32 140.6 98 64.3
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 6.5e-32 140.6 98 65.3
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 8.5e-32 140.2 98 66.3
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 8.5e-32 140.2 98 65.3
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 8.5e-32 140.2 98 66.3
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 8.5e-32 140.2 98 67.3
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 8.5e-32 140.2 98 66.3
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 1.1e-31 139.8 98 64.3
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.1e-31 139.8 98 67.3
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.1e-31 139.8 98 66.3
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 1.4e-31 139.4 98 66.3
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.4e-31 139.4 98 65.3
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 1.4e-31 139.4 98 66.3
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.4e-31 139.4 98 65.3
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.9e-31 139.0 98 66.3
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.9e-31 139.0 98 65.3
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.5e-31 138.7 98 64.3
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.5e-31 138.7 98 65.3
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.5e-31 138.7 98 63.3
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 4.2e-31 137.9 98 65.3
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 4.2e-31 137.9 103 65.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 5.5e-31 137.5 98 64.3
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.2e-31 137.1 113 61.1
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.2e-31 137.1 113 61.1
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 7.2e-31 137.1 98 64.3
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 7.2e-31 137.1 98 63.3
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 9.4e-31 136.7 98 65.3
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 9.4e-31 136.7 98 64.3
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.2e-30 136.3 98 64.3
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.2e-30 136.3 98 64.3
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 2.1e-30 135.6 98 63.3
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 2.7e-30 135.2 98 64.3
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.7e-30 135.2 113 60.2
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 2.7e-30 135.2 98 62.2
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 2.7e-30 135.2 98 62.2
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 3.6e-30 134.8 98 64.3
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 3.6e-30 134.8 98 63.3
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 4.7e-30 134.4 98 61.2
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 6.1e-30 134.0 98 63.3
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 7.9e-30 133.7 98 62.2
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.0e-29 133.3 98 63.3
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.4e-29 132.9 98 60.2
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.4e-29 132.9 96 64.6
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 3.0e-29 131.7 98 62.2
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.8e-29 130.2 96 61.5
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 1.1e-28 129.8 98 61.2
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 9.7e-28 126.7 98 59.2
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 9.7e-28 126.7 98 59.2
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 9.7e-28 126.7 98 59.2
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 1.3e-27 126.3 127 51.2
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 1.3e-27 126.3 98 59.2
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.7e-27 125.9 95 60.0
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.7e-27 125.9 95 60.0
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 4.8e-27 124.4 125 51.2
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 4.8e-27 124.4 131 48.9
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 2.4e-26 122.1 117 53.0
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 8.5e-24 113.6 141 43.3
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 5.5e-23 110.9 97 51.5
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 7.2e-23 110.5 75 69.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 3.6e-22 108.2 75 65.3
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 3.6e-22 108.2 69 72.5
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 8.0e-22 107.1 75 61.3
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.5e-20 102.8 67 70.1
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.5e-20 102.8 67 70.1
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 4.1e-18 94.7 96 51.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 1.2e-17 93.2 63 65.1
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 2.0e-17 92.4 65 63.1
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 1.0e-16 90.1 65 60.0
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 1.7e-16 89.4 65 60.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 6.1e-14 80.9 96 46.9
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 1.5e-12 76.3 50 64.0
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 3.4e-12 75.1 58 53.4
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 1.7e-11 72.8 50 60.0
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 1.7e-11 72.8 45 75.6
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 2.2e-11 72.4 58 53.4
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.8e-11 72.0 57 54.4
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.3e-11 70.5 50 60.0
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.3e-11 70.5 50 60.0
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.3e-11 70.5 50 60.0
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.8e-10 69.3 51 56.9
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 2.1e-06 55.8 89 41.6
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 2.7e-06 55.5 50 60.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 2.7e-06 55.5 50 60.0


User provided reference genes

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