Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.5e-77 292.0 142 100.0
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 8.2e-36 154.1 124 58.9
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.8e-35 152.9 108 64.8
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 3.1e-35 152.1 108 63.0
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 5.3e-35 151.4 129 55.8
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 5.3e-35 151.4 111 60.4
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 7.0e-35 151.0 116 57.8
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 7.0e-35 151.0 109 61.5
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 9.1e-35 150.6 107 68.2
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 9.1e-35 150.6 111 60.4
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 9.1e-35 150.6 108 62.0
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 9.1e-35 150.6 111 64.0
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 9.1e-35 150.6 107 65.4
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.2e-34 150.2 108 63.0
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 1.2e-34 150.2 111 60.4
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 1.2e-34 150.2 111 60.4
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 1.2e-34 150.2 122 59.0
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.6e-34 149.8 113 60.2
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.6e-34 149.8 111 59.5
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.6e-34 149.8 107 61.7
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 2.0e-34 149.4 111 62.2
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 2.0e-34 149.4 111 60.4
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 2.6e-34 149.1 108 62.0
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 4.5e-34 148.3 111 59.5
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 4.5e-34 148.3 111 59.5
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 4.5e-34 148.3 111 59.5
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.5e-34 148.3 111 58.6
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 5.9e-34 147.9 108 60.2
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 5.9e-34 147.9 124 55.6
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 5.9e-34 147.9 111 59.5
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 5.9e-34 147.9 111 60.4
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 5.9e-34 147.9 107 63.6
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.0e-33 147.1 109 60.6
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.0e-33 147.1 111 63.1
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 1.0e-33 147.1 111 57.7
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.0e-33 147.1 107 60.7
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.3e-33 146.7 111 60.4
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.3e-33 146.7 108 63.0
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.3e-33 146.7 108 62.0
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.7e-33 146.4 108 60.2
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.7e-33 146.4 108 60.2
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.2e-33 146.0 111 58.6
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 2.9e-33 145.6 111 60.4
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 2.9e-33 145.6 111 58.6
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 2.9e-33 145.6 108 58.3
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 3.8e-33 145.2 109 60.6
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 3.8e-33 145.2 111 58.6
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 3.8e-33 145.2 111 60.4
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 3.8e-33 145.2 108 61.1
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 3.8e-33 145.2 111 58.6
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 5.0e-33 144.8 122 54.9
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 5.0e-33 144.8 108 60.2
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 5.0e-33 144.8 108 61.1
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 5.0e-33 144.8 108 61.1
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 6.5e-33 144.4 111 58.6
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 6.5e-33 144.4 111 57.7
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 6.5e-33 144.4 122 54.9
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 8.5e-33 144.1 111 57.7
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 8.5e-33 144.1 111 57.7
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.5e-33 144.1 111 57.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 8.5e-33 144.1 111 58.6
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.1e-32 143.7 111 56.8
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 1.1e-32 143.7 111 57.7
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 1.5e-32 143.3 111 57.7
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 1.5e-32 143.3 111 57.7
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.9e-32 142.9 108 62.0
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.9e-32 142.9 107 62.6
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.9e-32 142.9 108 60.2
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 2.5e-32 142.5 111 56.8
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 2.5e-32 142.5 111 56.8
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 2.5e-32 142.5 108 59.3
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 2.5e-32 142.5 108 58.3
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 3.2e-32 142.1 138 51.4
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 5.5e-32 141.4 111 55.9
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 5.5e-32 141.4 107 60.7
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 5.5e-32 141.4 107 59.8
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 5.5e-32 141.4 107 59.8
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 5.5e-32 141.4 107 59.8
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 7.2e-32 141.0 111 58.6
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 7.2e-32 141.0 108 59.3
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.2e-32 141.0 108 59.3
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 7.2e-32 141.0 108 57.4
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 9.4e-32 140.6 112 60.7
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 2.1e-31 139.4 108 60.2
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 3.6e-31 138.7 144 49.3
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 4.7e-31 138.3 109 56.9
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 8.0e-31 137.5 108 56.5
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 8.8e-30 134.0 96 64.6
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.2e-29 133.7 100 60.0
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.5e-29 131.0 123 52.0
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.5e-29 131.0 123 52.0
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 2.2e-28 129.4 150 46.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.2e-28 129.4 123 51.2
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 4.8e-28 128.3 144 45.1
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 8.2e-28 127.5 97 59.8
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 8.2e-28 127.5 98 59.2
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.2e-28 127.5 96 61.5
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.4e-27 126.7 150 44.7
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 1.4e-27 126.7 127 48.0
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 3.5e-26 122.1 96 56.2
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 7.7e-26 120.9 99 55.6
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 2.7e-23 112.5 85 57.6
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 3.0e-22 109.0 78 59.0
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 3.0e-22 109.0 76 65.8
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 4.0e-22 108.6 78 60.3
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 2.6e-21 105.9 75 66.7
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 7.5e-21 104.4 113 46.0
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 7.5e-21 104.4 109 45.9
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 3.7e-20 102.1 78 56.4
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 1.6e-18 96.7 69 65.2
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 1.5e-16 90.1 64 64.1
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 1.9e-16 89.7 81 49.4
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.5e-16 89.4 69 60.9
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.5e-16 89.4 69 60.9
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 2.5e-16 89.4 60 60.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 4.2e-16 88.6 109 40.4
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.6e-15 86.7 63 57.1
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.0e-14 84.0 75 49.3
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.4e-14 83.6 65 50.8
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.4e-14 83.6 63 52.4
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 5.2e-14 81.6 78 44.9
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.4e-13 79.0 63 49.2
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 2.7e-10 69.3 48 60.4
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 1.5e-08 63.5 45 64.4
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.6e-07 60.1 40 60.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 2.3e-06 56.2 170 29.4


User provided reference genes

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