Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_18850 Physcomitrium patens HOM05D042831 ORTHO05D001588 0.0e+00 2760.7 1447 100.0
Pp3c5_7380 Physcomitrium patens HOM05D042831 ORTHO05D001588 0.0e+00 1538.1 1461 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4773 Anthoceros agrestis HOM05D026222 ORTHO05D015879 1.2e-17 97.1 757 24.2
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 1.0e-16 94.0 372 26.9
Mapoly0065s0025 Marchantia polymorpha HOM05D026222 ORTHO05D001588 1.5e-15 90.1 1370 21.9
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 1.1e-13 84.0 494 25.5
SEGI_17249 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 4.0e-13 82.0 1513 21.0
Rhsim10G0052000 Rhododendron simsii HOM05D001693 ORTHO05D001588 9.0e-13 80.9 396 25.5
Pp3c21_17470 Physcomitrium patens HOM05D047283 ORTHO05D050336 2.6e-12 79.3 443 26.6
Pp3c24_12930 Physcomitrium patens HOM05D026222 ORTHO05D015879 4.5e-12 78.6 1588 22.8
Pp3c8_11260 Physcomitrium patens HOM05D026222 ORTHO05D015879 7.6e-12 77.8 1581 21.9
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 2.9e-11 75.9 285 27.4
Rhsim08G0075400 Rhododendron simsii HOM05D001693 ORTHO05D001588 3.8e-11 75.5 408 23.5
Lsat_1_v5_gn_3_96320 Lactuca sativa HOM05D001693 ORTHO05D001588 4.9e-11 75.1 284 24.3
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.1e-10 73.9 272 25.7
Sc04g0004410 Simmondsia chinensis HOM05D001693 ORTHO05D001588 1.4e-10 73.6 321 24.6
TWI32G0306 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 1.4e-10 73.6 325 25.8
Haze_14419 Corylus avellana HOM05D001693 ORTHO05D001588 5.5e-10 71.6 329 25.2
QL02p067404 Quercus lobata HOM05D001693 ORTHO05D001588 1.2e-09 70.5 327 24.8
BcaC07g38931 Brassica carinata HOM05D001693 ORTHO05D001588 1.6e-09 70.1 354 23.7
CSS0011639 Camellia sinensis var. sinensis HOM05D001693 ORTHO05D001588 1.6e-09 70.1 309 24.9
CSS0025996 Camellia sinensis var. sinensis HOM05D001693 ORTHO05D001588 1.6e-09 70.1 309 24.9
Thhalv10018061m.g Eutrema salsugineum HOM05D001693 ORTHO05D001588 2.1e-09 69.7 302 25.2
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 2.1e-09 69.7 297 27.6
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 2.7e-09 69.3 148 32.4
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 2.7e-09 69.3 330 25.2
Pp3c18_4120 Physcomitrium patens HOM05D047283 ORTHO05D050336 2.7e-09 69.3 636 23.7
HanXRQChr17g0546021 Helianthus annuus HOM05D001693 ORTHO05D001588 3.5e-09 68.9 284 24.6
BcaB03g14493 Brassica carinata HOM05D001693 ORTHO05D001588 4.6e-09 68.6 305 25.2
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 4.6e-09 68.6 148 29.7
Mapoly0001s0174 Marchantia polymorpha HOM05D002515 ORTHO05D002722 7.9e-09 67.8 335 28.1
Ca_13744_v3 Cicer arietinum L. HOM05D001693 ORTHO05D001588 1.0e-08 67.4 290 26.2
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 1.0e-08 67.4 285 25.6
Pp3c14_9230 Physcomitrium patens HOM05D058579 ORTHO05D311013 1.0e-08 67.4 193 28.0
THA.LOC104822857 Tarenaya hassleriana HOM05D001693 ORTHO05D001588 1.0e-08 67.4 321 24.3
Lalb_Chr12g0197281 Lupinus albus HOM05D001693 ORTHO05D001588 1.8e-08 66.6 356 23.9
Aa31LG4G4480 Aethionema arabicum HOM05D001693 ORTHO05D001588 2.3e-08 66.2 326 25.8
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 2.3e-08 66.2 165 30.3
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 2.3e-08 66.2 289 23.5
AL1G31060 Arabidopsis lyrata HOM05D001693 ORTHO05D001588 3.0e-08 65.9 490 23.7
EL10Ac5g11155 Beta vulgaris HOM05D001693 ORTHO05D001588 3.0e-08 65.9 306 26.1
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 3.0e-08 65.9 482 22.4
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 3.0e-08 65.9 285 25.6
AUR62018198 Chenopodium quinoa HOM05D001693 ORTHO05D001588 3.9e-08 65.5 468 21.8
Lsat_1_v5_gn_4_172021 Lactuca sativa HOM05D001693 ORTHO05D001588 3.9e-08 65.5 347 23.6
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 6.7e-08 64.7 332 22.9
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 6.7e-08 64.7 339 22.4
CANSAT64G1243 Cannabis sativa HOM05D001693 ORTHO05D001588 6.7e-08 64.7 322 24.8
Cfa019350 Carpinus fangiana HOM05D001693 ORTHO05D001588 6.7e-08 64.7 349 25.2
Potri.012G061900 Populus trichocarpa HOM05D001693 ORTHO05D001588 6.7e-08 64.7 303 24.4
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 6.7e-08 64.7 321 23.1
Thecc.04G097400 Theobroma cacao HOM05D001693 ORTHO05D001588 6.7e-08 64.7 386 22.0
TWI81G0794 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 8.7e-08 64.3 372 25.0
SGA_v2.0_scaffold52G19126 Striga asiatica HOM05D001693 ORTHO05D001588 1.1e-07 63.9 334 24.9
AUR62021539 Chenopodium quinoa HOM05D001693 ORTHO05D001588 1.5e-07 63.5 326 24.5
ECA238G2570 Erigeron canadensis HOM05D001693 ORTHO05D001588 1.5e-07 63.5 292 23.6
Sp5g29370 Schrenkiella parvula HOM05D001693 ORTHO05D001588 1.5e-07 63.5 326 24.2
TWI60G1393 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 1.5e-07 63.5 347 23.6
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 1.9e-07 63.2 299 22.7
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.9e-07 63.2 168 26.8
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 1.9e-07 63.2 334 25.4
BcaB05g24836 Brassica carinata HOM05D001693 ORTHO05D001588 2.5e-07 62.8 474 24.1
Haze_07741 Corylus avellana HOM05D001693 ORTHO05D001588 2.5e-07 62.8 426 24.2
HanXRQChr08g0230431 Helianthus annuus HOM05D001693 ORTHO05D001588 2.5e-07 62.8 468 20.7
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.5e-07 62.8 269 25.7
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 2.5e-07 62.8 328 22.9
Actinidia18984 Actinidia chinensis HOM05D001693 ORTHO05D001588 3.3e-07 62.4 203 26.6
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 3.3e-07 62.4 140 30.0
Aa31LG7G3380 Aethionema arabicum HOM05D001693 ORTHO05D001588 4.3e-07 62.0 302 26.5
Aqoxy3G03674 Aquilegia oxysepala HOM05D001693 ORTHO05D001588 4.3e-07 62.0 380 22.6
arahy.Tifrunner.gnm1.ann1.DM14FR Arachis hypogaea HOM05D001693 ORTHO05D001588 4.3e-07 62.0 294 25.9
Nitab4.5_0001485g0020 Nicotiana tabacum HOM05D001693 ORTHO05D001588 4.3e-07 62.0 332 25.3
PGSC0003DMG400024535 Solanum tuberosum HOM05D001693 ORTHO05D001588 4.3e-07 62.0 335 25.4
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 5.7e-07 61.6 285 24.2
HanXRQChr14g0449791 Helianthus annuus HOM05D001693 ORTHO05D001588 5.7e-07 61.6 292 24.0
Nitab4.5_0010535g0010 Nicotiana tabacum HOM05D001693 ORTHO05D001588 5.7e-07 61.6 353 23.8
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 7.4e-07 61.2 246 24.8
CSS0027216 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 7.4e-07 61.2 288 22.2
Cc00_g03480 Coffea canephora HOM05D001693 ORTHO05D001588 7.4e-07 61.2 466 22.7
HanXRQChr15g0488921 Helianthus annuus HOM05D001693 ORTHO05D001588 7.4e-07 61.2 305 23.6
HanXRQChr17g0550241 Helianthus annuus HOM05D001693 ORTHO05D001588 7.4e-07 61.2 486 23.0
PGR083G1685 Punica granatum HOM05D001693 ORTHO05D001588 7.4e-07 61.2 197 25.4
TAR371G0403 Trochodendron aralioides HOM05D001693 ORTHO05D001588 7.4e-07 61.2 311 25.7
arahy.Tifrunner.gnm1.ann1.AFC50C Arachis hypogaea HOM05D001693 ORTHO05D001588 9.7e-07 60.8 343 24.2
MSTRG.4485 Avicennia marina HOM05D001693 ORTHO05D001588 9.7e-07 60.8 226 26.5
CSS0026829 Camellia sinensis var. sinensis HOM05D001693 ORTHO05D001588 9.7e-07 60.8 505 22.6
ClCG04G011700 Citrullus lanatus HOM05D001693 ORTHO05D001588 9.7e-07 60.8 319 23.5
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 9.7e-07 60.8 169 27.2
ECA246G0150 Erigeron canadensis HOM05D001693 ORTHO05D001588 9.7e-07 60.8 483 22.6
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 9.7e-07 60.8 252 27.0
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 9.7e-07 60.8 235 26.8
Lsat_1_v5_gn_2_89521 Lactuca sativa HOM05D001693 ORTHO05D001588 9.7e-07 60.8 313 24.0
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 9.7e-07 60.8 464 20.9
Sabra17G0084200 Salix brachista HOM05D001693 ORTHO05D001588 9.7e-07 60.8 146 30.1
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 9.7e-07 60.8 291 22.3
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 1.3e-06 60.5 321 24.0
Dinv17428 Davidia involucrata HOM05D001693 ORTHO05D001588 1.3e-06 60.5 310 24.5
Hma1.2p1_0029F.1_g018050 Hydrangea macrophylla HOM05D001693 ORTHO05D001588 1.3e-06 60.5 570 24.0
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.3e-06 60.5 322 24.2
A09p59790 Brassica napus HOM05D001693 ORTHO05D001588 1.6e-06 60.1 292 22.9
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.6e-06 60.1 434 22.6
Peaxi162Scf00166g00419 Petunia axillaris HOM05D001693 ORTHO05D001588 1.6e-06 60.1 388 20.4
arahy.Tifrunner.gnm1.ann1.8G7WAE Arachis hypogaea HOM05D001693 ORTHO05D001588 2.2e-06 59.7 334 24.3
CiPaw.02G031000 Carya illinoinensis HOM05D002082 ORTHO05D002130 2.2e-06 59.7 305 23.9
Gohir.A07G067800 Gossypium hirsutum HOM05D001693 ORTHO05D001588 2.2e-06 59.7 332 23.8
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.8e-06 59.3 251 25.5
Ah.12g062700 Amaranthus hybridus HOM05D001693 ORTHO05D001588 2.8e-06 59.3 305 23.6
C08p43220 Brassica napus HOM05D001693 ORTHO05D001588 2.8e-06 59.3 294 23.8
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 2.8e-06 59.3 245 24.9
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 2.8e-06 59.3 296 24.7
Lju41A2T69 Lonicera japonica HOM05D001693 ORTHO05D001588 2.8e-06 59.3 300 24.7
MD09G1068400 Malus domestica HOM05D001693 ORTHO05D001588 2.8e-06 59.3 300 25.3
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 2.8e-06 59.3 251 25.1
Pp3c1_31050 Physcomitrium patens HOM05D019165 ORTHO05D015879 2.8e-06 59.3 1257 21.7
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.8e-06 59.3 420 22.6
THA.LOC104822328 Tarenaya hassleriana HOM05D001693 ORTHO05D001588 2.8e-06 59.3 182 26.4
Atru.chr9.541 Acer truncatum HOM05D001693 ORTHO05D001588 3.7e-06 58.9 334 24.9
BcaB02g08522 Brassica carinata HOM05D002036 ORTHO05D001913 3.7e-06 58.9 278 25.9
Gohir.D07G072400 Gossypium hirsutum HOM05D001693 ORTHO05D001588 3.7e-06 58.9 331 24.2
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 3.7e-06 58.9 266 26.3
Oeu011042.2 Olea europaea HOM05D002082 ORTHO05D002130 3.7e-06 58.9 288 23.6
Solyc03g115000.3 Solanum lycopersicum HOM05D001693 ORTHO05D001588 3.7e-06 58.9 334 24.6
Sopen03g034070 Solanum pennellii HOM05D001693 ORTHO05D001588 3.7e-06 58.9 334 24.6
Thecc.03G104000 Theobroma cacao HOM05D001693 ORTHO05D001588 3.7e-06 58.9 337 24.9
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 4.8e-06 58.5 285 25.3
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 4.8e-06 58.5 302 23.8
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 4.8e-06 58.5 284 24.6
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 4.8e-06 58.5 207 26.6
Medtr3g026110 Medicago truncatula HOM05D001693 ORTHO05D001588 4.8e-06 58.5 519 22.0
Nn6g33418 Nelumbo nucifera HOM05D002082 ORTHO05D002130 4.8e-06 58.5 293 22.5
AT1G74160 Arabidopsis thaliana HOM05D001693 ORTHO05D001588 6.3e-06 58.2 324 23.1
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 6.3e-06 58.2 283 25.4
BcaC07g41313 Brassica carinata HOM05D001693 ORTHO05D001588 6.3e-06 58.2 294 23.8
BcaC07g41314 Brassica carinata HOM05D001693 ORTHO05D001588 6.3e-06 58.2 294 23.1
A02p19130 Brassica napus HOM05D001693 ORTHO05D001588 6.3e-06 58.2 491 23.6
BolC2t06709H Brassica oleracea HOM05D001693 ORTHO05D001588 6.3e-06 58.2 342 25.4
BraA02t06961Z Brassica rapa HOM05D001693 ORTHO05D001588 6.3e-06 58.2 491 23.6
Cpa.g.sc14.190 Carica papaya HOM05D001693 ORTHO05D001588 6.3e-06 58.2 353 21.8
Cpa.g.sc94.63 Carica papaya HOM05D001693 ORTHO05D001588 6.3e-06 58.2 313 24.9
CBR_g72675 Chara braunii HOM05D019165 ORTHO05D015879 6.3e-06 58.2 112 30.4
COL.COLO4_37967 Corchorus olitorius HOM05D001693 ORTHO05D001588 6.3e-06 58.2 359 22.0
Gorai.001G076600 Gossypium raimondii HOM05D001693 ORTHO05D001588 6.3e-06 58.2 332 23.8
Sabra05G0013200 Salix brachista HOM05D002110 ORTHO05D001148 6.3e-06 58.2 217 24.4
CDE07G0414 Ceratophyllum demersum HOM05D001693 ORTHO05D001588 8.2e-06 57.8 314 23.2
DCAR_025439 Daucus carota HOM05D001693 ORTHO05D001588 8.2e-06 57.8 320 25.9
Duzib205G1195 Durio zibethinus HOM05D001693 ORTHO05D001588 8.2e-06 57.8 384 23.2
Nitab4.5_0005910g0010 Nicotiana tabacum HOM05D001693 ORTHO05D001588 8.2e-06 57.8 354 23.2


User provided reference genes

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