Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 0.0e+00 1166.8 609 100.0
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 3.3e-150 536.2 546 53.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.2e-149 531.9 518 56.2
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 8.1e-149 531.6 518 54.4
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-146 524.2 518 52.9
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.2e-146 523.5 518 52.9
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.8e-146 522.7 526 53.4
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 4.9e-146 522.3 522 53.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 8.4e-146 521.5 519 54.3
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 8.4e-146 521.5 519 52.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.4e-146 521.5 522 54.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 8.4e-146 521.5 519 53.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.1e-145 521.2 523 53.2
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.4e-145 520.8 532 52.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.4e-145 520.8 519 53.9
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.9e-145 520.4 522 53.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.4e-145 520.0 522 52.7
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.2e-145 519.6 522 53.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 4.2e-145 519.2 522 53.6
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 5.5e-145 518.8 518 52.7
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 5.5e-145 518.8 523 53.2
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 7.1e-145 518.5 522 53.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 9.3e-145 518.1 593 49.7
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 9.3e-145 518.1 519 52.2
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 9.3e-145 518.1 532 52.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 9.3e-145 518.1 524 54.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-144 517.7 526 54.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.6e-144 517.3 520 53.5
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 2.1e-144 516.9 523 52.4
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.7e-144 516.5 518 52.5
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 3.5e-144 516.2 585 48.2
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.0e-144 515.4 588 49.0
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 6.0e-144 515.4 519 52.8
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 7.9e-144 515.0 539 51.4
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 7.9e-144 515.0 519 53.2
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.0e-143 514.6 522 52.5
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.0e-143 514.6 519 52.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.0e-143 514.6 539 51.4
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.0e-143 514.6 539 51.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.3e-143 514.2 539 51.4
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.8e-143 513.8 526 53.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 3.0e-143 513.1 519 52.4
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.0e-143 513.1 520 54.0
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.0e-143 513.1 526 53.4
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.0e-143 513.1 585 48.2
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.0e-143 513.1 532 52.1
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 3.9e-143 512.7 522 53.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 5.1e-143 512.3 584 49.1
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 5.1e-143 512.3 519 53.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 5.1e-143 512.3 533 50.7
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.7e-143 511.9 584 49.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.7e-143 511.9 519 52.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 8.7e-143 511.5 519 52.0
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 8.7e-143 511.5 519 52.4
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-142 511.1 586 49.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 1.1e-142 511.1 551 50.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.1e-142 511.1 591 47.9
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-142 510.8 584 49.3
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.9e-142 510.4 533 53.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.9e-142 510.4 525 52.8
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.9e-142 510.4 584 48.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.9e-142 510.4 519 52.6
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.5e-142 510.0 585 49.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.5e-142 510.0 519 53.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.3e-142 509.6 523 53.2
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 4.3e-142 509.2 588 48.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.6e-142 508.8 551 50.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 5.6e-142 508.8 519 52.0
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 7.4e-142 508.4 520 52.9
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 7.4e-142 508.4 524 52.3
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 7.4e-142 508.4 519 52.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 7.4e-142 508.4 519 52.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 9.6e-142 508.1 586 49.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 9.6e-142 508.1 588 48.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.3e-141 507.7 585 49.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.3e-141 507.7 526 52.1
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.3e-141 507.7 584 48.8
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.6e-141 507.3 588 50.0
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.1e-141 506.9 588 49.7
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.1e-141 506.9 600 47.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.8e-141 506.5 519 52.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.7e-141 506.1 519 52.2
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 4.8e-141 505.8 523 52.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 4.8e-141 505.8 519 51.8
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 6.2e-141 505.4 586 49.0
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 8.1e-141 505.0 586 49.0
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 8.1e-141 505.0 524 52.3
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 8.1e-141 505.0 588 49.5
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 8.1e-141 505.0 519 52.4
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.1e-140 504.6 521 52.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.4e-140 504.2 520 53.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.4e-140 504.2 524 52.3
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.4e-140 504.2 583 48.7
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.8e-140 503.8 584 48.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.4e-140 503.4 586 48.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.1e-140 503.1 596 47.5
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.0e-140 502.7 519 52.0
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.3e-140 502.3 521 52.6
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 6.9e-140 501.9 521 52.0
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.5e-139 500.7 521 52.2
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 3.4e-139 499.6 586 48.5
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 4.5e-139 499.2 519 52.6
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.8e-139 498.8 577 49.0
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.3e-138 497.7 519 51.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.3e-138 497.7 507 52.3
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.9e-138 495.7 474 55.3
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.1e-137 494.6 507 50.9
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 5.5e-137 492.3 551 49.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 7.1e-137 491.9 540 50.4
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.1e-136 490.3 554 49.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 4.6e-136 489.2 584 48.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.0e-136 488.8 524 50.4
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.3e-135 487.6 520 50.8
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-135 486.5 588 47.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 6.7e-135 485.3 528 50.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.1e-132 476.5 526 50.4
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 4.1e-132 476.1 601 46.3
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.5e-129 465.7 531 49.0
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.7e-128 463.4 594 45.6
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 3.0e-127 459.9 620 43.9
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.9e-127 459.5 627 43.5
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 4.5e-123 446.0 520 48.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.4e-119 434.5 442 53.8
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.1e-113 414.8 528 46.0
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.6e-112 409.8 517 47.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.1e-108 396.4 442 50.0
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.9e-105 387.5 329 60.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 7.7e-99 365.5 428 46.7
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 3.6e-96 356.7 247 72.1
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.5e-94 351.3 558 41.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.2e-93 347.4 247 69.6
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 7.7e-91 339.0 502 41.4
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.6e-74 282.3 367 43.6
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.2e-72 278.5 477 39.4
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.3e-71 274.2 259 57.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-70 271.9 182 75.3
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 8.9e-63 245.7 260 51.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 6.6e-58 229.6 320 40.6
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.0e-55 220.3 318 41.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.8e-54 216.5 363 36.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.3e-42 178.7 253 40.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 7.9e-35 152.9 109 68.8
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.2e-32 143.3 227 38.8
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.7e-27 127.9 199 39.7
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.3e-25 120.9 79 72.2
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.1e-23 115.9 131 47.3
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.2e-16 89.7 66 62.1
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-13 82.8 53 73.6
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.7e-13 82.0 51 76.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.7e-13 82.0 51 76.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 3.0e-10 71.2 58 63.8
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 6.9e-07 60.1 50 56.0
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.5e-06 58.9 48 60.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.6e-06 58.2 30 76.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.6e-06 58.2 30 76.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.9e-06 57.0 262 27.5
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 7.7e-06 56.6 251 25.5
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 7.7e-06 56.6 58 46.6


User provided reference genes

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