Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 6.5e-61 237.3 125 100.0
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 8.8e-58 226.9 124 95.2
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 4.0e-42 174.9 119 71.4
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 1.8e-39 166.0 119 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 7.7e-38 160.6 121 65.3
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 2.6e-33 145.6 125 61.6
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 2.6e-33 145.6 111 64.0
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 4.4e-33 144.8 125 61.6
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 1.8e-31 139.4 119 60.5
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 5.4e-31 137.9 119 59.7
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 9.2e-31 137.1 119 59.7
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 9.2e-31 137.1 123 57.7
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.2e-30 136.7 119 58.8
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.2e-30 136.7 119 58.8
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 1.6e-30 136.3 119 58.8
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.6e-30 136.3 119 58.8
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.6e-30 136.3 119 58.8
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 2.0e-30 136.0 123 56.1
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 2.0e-30 136.0 119 58.8
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 2.7e-30 135.6 119 59.7
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 3.5e-30 135.2 119 56.3
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 3.5e-30 135.2 119 58.8
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 4.5e-30 134.8 119 57.1
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 4.5e-30 134.8 119 58.8
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 5.9e-30 134.4 119 58.0
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 7.8e-30 134.0 119 58.8
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 7.8e-30 134.0 119 57.1
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 7.8e-30 134.0 119 57.1
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 1.0e-29 133.7 123 57.7
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 1.0e-29 133.7 123 57.7
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 1.0e-29 133.7 123 57.7
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.3e-29 133.3 119 58.8
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 1.3e-29 133.3 119 57.1
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 1.3e-29 133.3 123 57.7
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 1.3e-29 133.3 119 58.8
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 1.3e-29 133.3 119 56.3
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 1.3e-29 133.3 122 57.4
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 1.7e-29 132.9 114 58.8
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 2.3e-29 132.5 113 60.2
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 2.3e-29 132.5 119 58.0
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 2.3e-29 132.5 123 55.3
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.3e-29 132.5 119 58.0
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.3e-29 132.5 119 58.0
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 2.3e-29 132.5 119 58.0
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 2.3e-29 132.5 119 57.1
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 2.9e-29 132.1 114 59.6
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 2.9e-29 132.1 119 58.0
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 5.0e-29 131.3 119 54.6
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 5.0e-29 131.3 119 57.1
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 6.6e-29 131.0 123 54.5
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 6.6e-29 131.0 119 57.1
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 6.6e-29 131.0 119 57.1
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 58.0
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 57.1
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 56.3
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 56.3
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 56.3
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 58.0
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 57.1
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 56.3
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 8.6e-29 130.6 119 57.1
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 1.1e-28 130.2 119 57.1
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 1.5e-28 129.8 119 57.1
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 1.5e-28 129.8 119 57.1
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 1.5e-28 129.8 119 56.3
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 1.5e-28 129.8 114 60.5
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 1.5e-28 129.8 119 56.3
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 1.5e-28 129.8 119 56.3
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 1.5e-28 129.8 123 54.5
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 1.5e-28 129.8 119 56.3
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.5e-28 129.8 113 60.2
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 1.9e-28 129.4 121 57.0
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 2.5e-28 129.0 119 55.5
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 2.5e-28 129.0 119 54.6
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 2.5e-28 129.0 121 56.2
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 2.5e-28 129.0 119 55.5
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.3e-28 128.6 123 55.3
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 3.3e-28 128.6 121 55.4
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 4.3e-28 128.3 119 56.3
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 4.3e-28 128.3 119 56.3
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 4.3e-28 128.3 119 56.3
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 4.3e-28 128.3 119 56.3
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 4.3e-28 128.3 119 56.3
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 4.3e-28 128.3 121 55.4
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 5.6e-28 127.9 114 57.9
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 5.6e-28 127.9 114 58.8
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 7.3e-28 127.5 114 60.5
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 9.5e-28 127.1 119 55.5
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 9.5e-28 127.1 119 55.5
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 9.5e-28 127.1 119 54.6
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 9.5e-28 127.1 119 54.6
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 1.2e-27 126.7 119 54.6
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 1.2e-27 126.7 119 53.8
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 1.2e-27 126.7 119 53.8
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 1.2e-27 126.7 114 61.4
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 1.2e-27 126.7 114 57.0
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 1.6e-27 126.3 119 55.5
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 2.1e-27 125.9 119 54.6
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 2.8e-27 125.6 114 57.9
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 2.8e-27 125.6 119 54.6
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 3.6e-27 125.2 119 53.8
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 4.7e-27 124.8 119 53.8
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 4.7e-27 124.8 125 52.0
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 4.7e-27 124.8 114 59.6
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 6.1e-27 124.4 114 56.1
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 6.1e-27 124.4 125 52.0
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 6.1e-27 124.4 125 53.6
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 8.0e-27 124.0 125 52.0
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 8.0e-27 124.0 125 52.8
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 1.0e-26 123.6 125 52.0
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 1.0e-26 123.6 114 55.3
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 1.0e-26 123.6 114 60.5
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 1.4e-26 123.2 114 57.0
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 1.4e-26 123.2 111 56.8
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 1.4e-26 123.2 123 55.3
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 1.4e-26 123.2 123 55.3
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 2.3e-26 122.5 114 57.9
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 3.0e-26 122.1 114 58.8
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 4.0e-26 121.7 125 53.6
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 5.2e-26 121.3 114 57.9
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 6.8e-26 120.9 114 57.0
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 8.9e-26 120.6 114 54.4
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 8.9e-26 120.6 114 56.1
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 1.2e-25 120.2 111 57.7
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.2e-25 120.2 104 57.7
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 1.2e-25 120.2 114 56.1
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 1.2e-25 120.2 125 51.2
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 1.2e-25 120.2 114 56.1
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 1.5e-25 119.8 114 56.1
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 2.0e-25 119.4 97 60.8
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 2.0e-25 119.4 114 56.1
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 2.0e-25 119.4 114 56.1
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 2.6e-25 119.0 119 54.6
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 7.5e-25 117.5 114 53.5
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 7.5e-25 117.5 101 60.4
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 7.5e-25 117.5 101 60.4
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 7.5e-25 117.5 114 53.5
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 9.8e-25 117.1 114 55.3
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 1.7e-24 116.3 99 61.6
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 2.2e-24 115.9 98 58.2
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 2.9e-24 115.5 114 53.5
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 3.7e-24 115.2 94 60.6
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 6.4e-24 114.4 97 59.8
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 6.4e-24 114.4 103 55.3
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 8.3e-24 114.0 96 59.4
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 1.1e-23 113.6 159 41.5
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 1.4e-23 113.2 97 58.8
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.4e-23 113.2 97 58.8
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 1.4e-23 113.2 134 49.3
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 2.4e-23 112.5 91 59.3
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 3.2e-23 112.1 91 59.3
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 1.2e-22 110.2 94 61.7
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 2.0e-22 109.4 113 52.2
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 2.7e-22 109.0 109 52.3
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 1.3e-21 106.7 96 56.2
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 5.0e-21 104.8 119 52.1
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 8.6e-21 104.0 126 46.8
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.1e-20 103.6 78 66.7
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 4.3e-20 101.7 101 53.5
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 9.5e-20 100.5 119 50.4
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 2.1e-19 99.4 130 45.4
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 2.8e-19 99.0 86 54.7
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 8.0e-19 97.4 80 60.0
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 8.0e-19 97.4 75 61.3
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 1.1e-18 97.1 80 58.8
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 3.1e-18 95.5 123 46.3
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.2e-17 93.6 85 55.3
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.2e-17 93.6 88 53.4
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 4.4e-17 91.7 186 34.9
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 4.9e-16 88.2 79 59.5
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 1.1e-15 87.0 75 57.3
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 1.9e-15 86.3 75 61.3
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 1.9e-15 86.3 98 48.0
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.4e-15 85.9 75 57.3
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.4e-15 85.9 75 57.3
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 3.2e-15 85.5 86 58.1
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.2e-14 83.6 86 52.3
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 1.8e-10 69.7 64 59.4
AUR62030679 Chenopodium quinoa HOM05D003627 ORTHO05D004307 2.2e-08 62.8 80 46.2
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 8.3e-08 60.8 55 54.5


User provided reference genes

Program Settings