Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-169 598.2 305 100.0
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-55 219.9 155 66.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-53 213.4 172 61.6
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.0e-52 208.8 172 60.5
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.3e-49 198.7 176 57.4
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-46 190.7 154 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-44 184.5 178 53.9
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-38 163.7 140 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.2e-37 159.5 172 52.3
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.6e-36 156.0 168 50.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.1e-36 155.6 169 46.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-31 141.0 175 42.9
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.6e-31 140.2 155 45.8
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-30 137.5 148 50.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 9.4e-29 131.7 252 32.5
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-28 130.6 192 38.5
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.7e-28 130.2 265 31.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 4.7e-28 129.4 178 36.0
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.7e-28 129.4 193 37.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 6.7e-27 125.6 170 38.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 6.7e-27 125.6 230 31.7
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-26 124.0 191 36.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.0e-26 124.0 191 36.1
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 3.3e-26 123.2 165 37.6
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 7.4e-26 122.1 192 35.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.7e-25 120.9 167 38.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.2e-25 120.6 150 40.0
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.2e-25 120.6 194 34.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.8e-25 120.2 191 36.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.8e-25 120.2 190 37.4
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 3.7e-25 119.8 188 33.5
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.7e-25 119.8 191 35.6
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 6.3e-25 119.0 194 35.1
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 8.2e-25 118.6 186 34.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.2e-25 118.6 167 38.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 8.2e-25 118.6 186 35.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.1e-24 118.2 188 35.1
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.1e-24 118.2 168 39.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.4e-24 117.9 146 39.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.4e-24 117.9 188 36.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.4e-24 117.9 149 40.9
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.8e-24 117.5 187 37.4
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.8e-24 117.5 188 34.0
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.8e-24 117.5 194 33.5
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.8e-24 117.5 196 33.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.8e-24 117.5 186 34.4
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.4e-24 117.1 188 34.0
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.1e-24 116.7 150 41.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.1e-24 116.7 192 33.9
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 4.1e-24 116.3 167 37.7
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.1e-24 116.3 167 37.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 4.1e-24 116.3 167 40.1
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 4.1e-24 116.3 187 34.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.1e-24 116.3 149 41.6
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 5.3e-24 115.9 147 40.8
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.3e-24 115.9 167 37.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.3e-24 115.9 167 37.7
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 5.3e-24 115.9 185 37.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 7.0e-24 115.5 188 33.5
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 7.0e-24 115.5 189 35.4
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 7.0e-24 115.5 168 35.7
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 7.0e-24 115.5 186 34.9
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 7.0e-24 115.5 194 34.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 9.1e-24 115.2 200 34.0
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-23 114.8 167 37.1
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.2e-23 114.8 190 34.2
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.6e-23 114.4 197 33.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.0e-23 114.0 188 35.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.0e-23 114.0 189 34.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.6e-23 113.6 168 35.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.6e-23 113.6 186 36.6
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.6e-23 113.6 185 35.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.6e-23 113.6 188 33.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 2.6e-23 113.6 149 38.3
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.6e-23 113.6 188 34.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.5e-23 113.2 171 37.4
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 3.5e-23 113.2 189 34.9
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 4.5e-23 112.8 191 34.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 4.5e-23 112.8 168 35.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.5e-23 112.8 189 36.5
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.5e-23 112.8 188 33.5
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 4.5e-23 112.8 174 33.9
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 5.9e-23 112.5 189 34.4
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 5.9e-23 112.5 189 34.9
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.7e-23 112.1 146 39.7
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 7.7e-23 112.1 191 35.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.0e-22 111.7 144 40.3
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.3e-22 111.3 146 39.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.7e-22 110.9 189 33.9
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.7e-22 110.9 186 33.3
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.2e-22 110.5 152 38.2
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.9e-22 110.2 192 33.3
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.9e-22 110.2 186 32.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 5.0e-22 109.4 188 34.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.0e-22 109.4 192 32.8
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 6.5e-22 109.0 189 33.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.5e-22 109.0 189 33.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 6.5e-22 109.0 190 34.7
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 6.5e-22 109.0 188 33.0
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 6.5e-22 109.0 188 33.0
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.5e-22 108.6 147 38.8
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 8.5e-22 108.6 147 38.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 8.5e-22 108.6 147 37.4
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.5e-22 108.6 194 35.6
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.1e-21 108.2 147 38.1
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.5e-21 107.8 171 35.7
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.5e-21 107.8 189 33.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.9e-21 107.5 192 32.8
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-21 107.1 189 33.3
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 3.2e-21 106.7 189 33.9
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 3.2e-21 106.7 189 33.3
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.2e-21 106.7 189 33.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-21 106.3 120 45.8
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-21 106.3 189 33.3
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.2e-21 106.3 189 33.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.5e-21 105.9 189 33.9
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 5.5e-21 105.9 147 37.4
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 5.5e-21 105.9 177 33.9
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 7.2e-21 105.5 189 32.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 7.2e-21 105.5 189 32.8
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 7.2e-21 105.5 189 33.3
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 7.2e-21 105.5 189 33.3
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 7.2e-21 105.5 214 31.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 9.4e-21 105.1 191 31.9
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 9.4e-21 105.1 188 31.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.2e-20 104.8 150 36.7
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-20 104.8 150 40.0
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-20 104.4 189 33.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.1e-20 104.0 151 37.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.7e-20 103.6 189 33.9
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 4.7e-20 102.8 190 34.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.0e-19 101.7 173 34.7
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.4e-19 101.3 168 34.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.8e-19 100.9 192 32.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.8e-19 100.9 149 36.9
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.0e-19 100.1 191 34.6
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 4.0e-19 99.8 193 34.2
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 5.2e-19 99.4 153 36.6
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 5.2e-19 99.4 190 32.1
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 5.2e-19 99.4 193 32.1
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.5e-18 95.5 221 30.3
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 7.5e-18 95.5 154 37.0
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-17 94.7 189 31.7
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.7e-17 93.2 176 31.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.8e-17 92.8 174 35.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.1e-16 89.7 119 38.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-15 88.2 176 33.0
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-15 87.4 176 33.5
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.5e-15 86.7 176 31.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-14 84.3 124 38.7
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.5e-14 82.0 122 36.9
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.1e-13 81.6 205 30.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 9.4e-13 78.6 128 35.9
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.2e-12 78.2 170 29.4
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.7e-12 77.0 160 31.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.7e-12 76.3 173 31.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.1e-12 75.9 198 31.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-11 74.7 154 33.1
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.0e-11 73.6 142 33.8
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.2e-11 72.8 134 37.3
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.6e-10 70.5 79 43.0
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.8e-10 68.6 194 27.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.3e-09 68.2 158 28.5
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.0e-08 62.4 87 39.1
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.0e-07 60.8 167 30.5
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.7e-07 58.9 177 27.1
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-06 57.4 93 38.7


User provided reference genes

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