Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.2e-194 682.9 343 100.0
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.5e-179 630.9 343 90.4
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 4.4e-168 594.7 341 84.5
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.1e-163 580.1 343 81.9
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.5e-155 552.4 335 79.4
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.1e-153 545.4 334 79.3
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.4e-152 541.6 333 79.3
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 5.8e-152 541.2 334 78.7
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.3e-151 540.0 338 78.7
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 3.7e-151 538.5 337 77.4
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 6.4e-151 537.7 337 76.9
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 8.3e-151 537.3 337 77.4
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.1e-150 537.0 334 77.8
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.9e-150 536.2 341 76.8
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.4e-150 535.8 341 76.8
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 3.2e-150 535.4 334 76.9
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 3.2e-150 535.4 336 77.1
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 3.2e-150 535.4 335 77.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 5.4e-150 534.6 339 75.8
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 5.4e-150 534.6 334 76.6
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.4e-150 534.6 335 77.6
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 7.1e-150 534.3 339 76.7
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.1e-150 534.3 338 77.2
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 7.1e-150 534.3 339 76.1
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 9.2e-150 533.9 335 77.9
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 9.2e-150 533.9 337 76.6
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.2e-150 533.9 335 77.0
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 9.2e-150 533.9 335 77.3
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.2e-149 533.5 334 76.9
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-149 533.5 334 76.9
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.2e-149 533.5 336 76.8
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.2e-149 533.5 335 77.6
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.2e-149 533.5 336 77.1
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.2e-149 533.5 338 77.8
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.2e-149 533.5 338 77.8
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.6e-149 533.1 334 77.2
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.6e-149 533.1 337 76.3
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-149 533.1 334 76.9
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.6e-149 533.1 334 77.2
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.6e-149 533.1 339 75.8
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.6e-149 533.1 336 76.5
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.1e-149 532.7 335 77.6
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.7e-149 532.3 334 76.6
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.7e-149 532.3 336 75.6
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.7e-149 532.3 338 77.5
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.5e-149 531.9 344 75.3
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 3.5e-149 531.9 337 76.3
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 3.5e-149 531.9 334 77.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 3.5e-149 531.9 334 76.3
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.6e-149 531.6 342 76.0
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 4.6e-149 531.6 334 77.2
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 6.0e-149 531.2 337 76.3
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 6.0e-149 531.2 335 77.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 7.8e-149 530.8 334 76.9
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 7.8e-149 530.8 334 77.2
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.7e-148 529.6 334 76.3
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 5.1e-148 528.1 332 76.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 6.6e-148 527.7 334 76.3
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 8.6e-148 527.3 334 75.7
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 8.6e-148 527.3 334 76.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-147 526.9 335 76.4
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.5e-147 526.6 334 75.1
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-147 526.6 334 75.1
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 75.4
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 75.4
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 75.4
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 75.1
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.5e-147 525.8 334 76.9
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.3e-147 525.4 337 75.4
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 4.3e-147 525.0 332 76.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 5.6e-147 524.6 334 76.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 5.6e-147 524.6 334 74.9
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 5.6e-147 524.6 334 75.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 7.3e-147 524.2 337 74.5
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.6e-146 523.1 334 75.4
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 2.1e-146 522.7 321 78.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.1e-146 522.7 334 74.6
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.1e-146 522.7 337 76.6
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.6e-146 521.9 320 79.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.6e-146 521.9 338 74.3
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 4.7e-146 521.5 333 75.4
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 6.2e-146 521.2 334 75.4
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.4e-145 520.0 317 79.5
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.6e-144 515.8 334 74.0
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.4e-144 515.4 336 74.7
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.4e-144 515.4 343 72.6
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 9.9e-144 513.8 345 73.0
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.3e-143 513.5 334 74.6
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.7e-143 513.1 335 74.9
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.2e-143 512.7 311 78.5
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.2e-143 512.7 354 72.9
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.9e-143 512.3 335 74.9
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 2.9e-143 512.3 335 74.9
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.9e-143 512.3 335 74.9
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.9e-143 512.3 337 73.6
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.8e-143 511.9 335 74.6
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.8e-143 511.9 335 74.6
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 6.4e-143 511.1 335 74.6
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 6.4e-143 511.1 335 74.9
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 6.4e-143 511.1 335 74.6
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.4e-143 510.8 315 77.8
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 8.4e-143 510.8 335 74.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.4e-142 510.0 320 76.6
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.9e-142 509.6 335 74.3
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.9e-142 509.6 335 74.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.0
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.0
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.4e-142 509.2 334 73.7
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.2e-142 508.8 335 74.3
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 4.2e-142 508.4 335 74.0
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.2e-142 508.4 327 75.5
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 7.1e-142 507.7 325 75.4
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.2e-141 506.9 335 74.0
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.2e-141 506.9 335 74.0
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 4.6e-141 505.0 335 73.1
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.3e-140 503.4 350 71.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 2.3e-140 502.7 374 67.9
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.6e-140 501.1 335 72.2
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 5.6e-139 498.0 311 76.5
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 9.6e-139 497.3 316 75.6
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 9.6e-139 497.3 337 72.1
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 9.0e-137 490.7 316 75.9
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 5.8e-136 488.0 334 71.9
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.8e-135 485.3 338 72.2
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 4.0e-129 465.3 332 69.0
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 5.8e-128 461.5 419 59.2
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 7.6e-128 461.1 377 63.7
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.6e-125 453.4 361 64.8
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.5e-123 446.0 289 74.7
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 4.3e-123 445.3 267 79.0
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 9.9e-120 434.1 264 80.7
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 9.9e-120 434.1 264 80.7
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.5e-118 429.5 264 78.8
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 3.2e-118 429.1 335 64.5
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 7.9e-117 424.5 250 83.6
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.0e-116 424.1 337 65.0
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 7.1e-110 401.4 332 62.0
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 6.0e-109 398.3 251 75.3
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.0e-108 397.5 341 60.1
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 8.7e-108 394.4 237 79.3
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.9e-107 393.3 332 60.2
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 4.5e-104 382.1 317 58.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.8e-100 370.2 321 58.3
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 5.1e-100 368.6 251 72.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 7.2e-94 348.2 216 76.4
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.8e-51 205.7 170 66.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 3.9e-47 193.0 131 74.8
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.7e-31 141.0 180 50.6
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 5.8e-27 125.9 74 82.4
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-22 111.7 76 71.1
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.6e-21 107.8 79 59.5
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 8.1e-21 105.5 75 69.3
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 4.2e-17 93.2 79 60.8
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.2e-11 75.1 52 65.4
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.9e-09 67.8 39 79.5
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.2e-09 67.0 118 40.7
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.6e-08 64.7 61 54.1
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.3e-07 61.6 60 55.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.3e-07 61.6 60 55.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.8e-07 61.2 55 54.5


User provided reference genes

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