Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.8e-241 838.2 419 100.0
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 4.5e-183 644.8 423 75.2
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.6e-146 522.7 442 59.5
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 2.4e-123 446.4 427 53.9
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 6.2e-116 421.8 419 50.8
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 5.3e-115 418.7 413 51.3
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 2.0e-114 416.8 419 50.8
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 2.0e-114 416.8 420 50.7
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 4.5e-114 415.6 424 51.7
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 5.8e-114 415.2 417 49.6
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 7.6e-114 414.8 422 49.5
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 1.7e-113 413.7 421 48.7
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 2.9e-113 412.9 425 49.2
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 3.8e-113 412.5 419 50.4
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 4.9e-113 412.1 419 50.1
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 6.5e-113 411.8 423 48.7
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 6.5e-113 411.8 422 49.8
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 8.4e-113 411.4 419 49.4
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 1.9e-112 410.2 423 49.6
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 4.2e-112 409.1 420 49.3
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 5.5e-112 408.7 420 48.6
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 7.1e-112 408.3 423 49.6
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 9.3e-112 407.9 425 48.5
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 2.1e-111 406.8 420 51.0
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 2.7e-111 406.4 422 48.3
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 6.0e-111 405.2 423 49.2
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 7.9e-111 404.8 419 49.2
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 7.9e-111 404.8 423 49.6
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 1.3e-110 404.1 426 49.5
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 1.3e-110 404.1 420 50.5
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 1.3e-110 404.1 419 48.9
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 8.7e-110 401.4 420 49.8
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 1.5e-109 400.6 427 50.1
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 1.5e-109 400.6 421 48.5
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 1.9e-109 400.2 419 48.0
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 3.3e-109 399.4 420 49.0
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 3.3e-109 399.4 419 49.9
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 7.4e-109 398.3 421 49.2
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 9.7e-109 397.9 421 49.4
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 1.3e-108 397.5 418 48.8
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 1.3e-108 397.5 418 49.5
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.6e-108 397.1 419 48.9
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.2e-108 396.7 424 49.3
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.8e-108 396.4 421 49.6
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.7e-108 396.0 444 48.2
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 4.8e-108 395.6 418 49.0
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 8.2e-108 394.8 424 48.6
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 1.4e-107 394.0 425 49.2
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 2.4e-107 393.3 425 46.8
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 6.9e-107 391.7 425 47.8
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 6.9e-107 391.7 419 48.9
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 9.0e-107 391.3 424 48.6
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 9.0e-107 391.3 420 46.4
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 1.5e-106 390.6 421 48.0
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 2.0e-106 390.2 418 49.8
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 2.6e-106 389.8 421 48.0
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 1.0e-105 387.9 425 47.1
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 1.7e-105 387.1 419 50.1
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.7e-105 387.1 418 49.0
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 2.2e-105 386.7 420 47.9
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 5.0e-105 385.6 429 47.8
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 5.0e-105 385.6 421 48.2
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 8.5e-105 384.8 421 47.7
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 2.5e-104 383.3 423 48.0
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 3.2e-104 382.9 418 48.1
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 3.2e-104 382.9 419 46.5
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 5.5e-104 382.1 419 47.5
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 7.2e-104 381.7 417 46.8
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.2e-103 380.9 419 48.4
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.6e-103 380.6 451 46.1
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 6.1e-103 378.6 415 48.2
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 3.9e-102 375.9 419 47.0
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 5.1e-102 375.6 424 47.6
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 3.3e-101 372.9 443 45.4
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 7.4e-101 371.7 444 45.5
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 9.1e-99 364.8 416 46.2
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 2.7e-95 353.2 419 43.9
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.2e-90 337.8 417 43.9
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.0e-90 337.0 442 42.5
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 1.5e-85 320.9 362 48.9
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.3e-84 317.8 405 43.2
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 2.0e-74 283.9 349 43.6
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 3.8e-73 279.6 227 55.9
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 2.5e-72 276.9 227 55.9
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 4.5e-66 256.1 165 67.3
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 1.8e-59 234.2 316 42.1
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 1.6e-58 231.1 334 38.3
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 7.8e-58 228.8 148 67.6
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 1.2e-55 221.5 273 45.4
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 9.8e-53 211.8 141 65.2
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 2.2e-52 210.7 141 66.0
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 4.1e-51 206.5 143 63.6
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.6e-45 187.2 143 60.8
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 3.7e-44 183.3 275 39.6
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 1.7e-36 157.9 268 38.1
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 1.9e-35 154.5 116 58.6
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 5.4e-35 152.9 314 34.4
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 1.6e-34 151.4 125 56.8
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.3e-28 131.7 267 34.1
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 3.8e-28 130.2 126 50.0
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 5.4e-27 126.3 211 39.3
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 9.2e-27 125.6 236 35.2
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.6e-26 124.8 89 60.7
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 2.1e-23 114.4 155 39.4
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 1.5e-21 108.2 223 31.8
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 9.3e-19 99.0 107 46.7
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 9.3e-19 99.0 102 48.0
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 1.0e-17 95.5 67 58.2
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.0e-17 95.5 107 46.7
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 3.3e-16 90.5 107 45.8
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 9.6e-16 89.0 94 46.8
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 1.6e-15 88.2 145 37.2
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 7.6e-13 79.3 103 44.7
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.9e-11 74.7 263 25.1
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 5.4e-11 73.2 164 26.8
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 5.4e-11 73.2 160 26.9
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 7.1e-11 72.8 165 29.1
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.2e-10 72.0 57 52.6
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 1.2e-10 72.0 168 27.4
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 1.2e-10 72.0 168 27.4
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.2e-10 72.0 170 27.1
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.6e-10 71.6 170 29.4
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 2.1e-10 71.2 169 29.6
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 2.1e-10 71.2 174 28.7
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 2.7e-10 70.9 168 27.4
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 3.5e-10 70.5 169 28.4
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 3.5e-10 70.5 160 27.5
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 4.6e-10 70.1 161 28.0
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 4.6e-10 70.1 168 27.4
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 6.0e-10 69.7 169 27.8
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 6.0e-10 69.7 160 26.9
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 6.0e-10 69.7 168 27.4
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 7.9e-10 69.3 168 26.8
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 7.9e-10 69.3 163 26.4
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 7.9e-10 69.3 165 29.1
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 7.9e-10 69.3 160 26.9
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.0e-09 68.9 160 26.9
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 1.3e-09 68.6 168 26.8
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 1.3e-09 68.6 169 26.6
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.3e-09 68.6 160 26.2
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 1.3e-09 68.6 163 26.4
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.8e-09 68.2 163 25.8
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 1.8e-09 68.2 163 25.8
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 1.8e-09 68.2 163 25.8
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.8e-09 68.2 163 25.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.8e-09 68.2 168 26.8
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 2.3e-09 67.8 163 25.2
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.3e-09 67.8 169 27.2
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 2.3e-09 67.8 169 27.8
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 3.9e-09 67.0 161 29.2
Pp3c6_26630 Physcomitrium patens HOM05D016606 ORTHO05D018318 3.9e-09 67.0 158 28.5
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 6.7e-09 66.2 188 26.6
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 6.7e-09 66.2 161 29.2
Pp3c13_12040 Physcomitrium patens HOM05D016606 ORTHO05D018318 6.7e-09 66.2 161 27.3
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 8.7e-09 65.9 163 26.4
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 8.7e-09 65.9 161 26.1
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.1e-08 65.5 176 26.7
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.1e-08 65.5 187 25.7
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 1.5e-08 65.1 160 28.1
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 1.9e-08 64.7 164 25.0
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.9e-08 64.7 160 26.2
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 2.5e-08 64.3 159 28.9
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 3.3e-08 63.9 168 25.6
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 4.3e-08 63.5 168 26.2
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 4.3e-08 63.5 160 26.9
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 5.6e-08 63.2 168 26.2
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 5.6e-08 63.2 160 25.0
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 5.6e-08 63.2 168 26.2
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 26.2
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 25.6
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 9.6e-08 62.4 161 28.0
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 9.6e-08 62.4 51 52.9
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 4.8e-07 60.1 169 26.0
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 6.2e-07 59.7 168 25.0
SMO334G0059 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 8.1e-07 59.3 63 49.2
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 8.1e-07 59.3 168 26.2
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 1.1e-06 58.9 184 24.5
CBR_g22374 Chara braunii HOM05D016606 ORTHO05D018318 1.4e-06 58.5 148 27.0
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 5.3e-06 56.6 188 25.5
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 5.3e-06 56.6 163 23.9
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 5.3e-06 56.6 158 24.7


User provided reference genes

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