Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 0.0e+00 1207.6 634 100.0
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.4e-111 407.9 610 44.1
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 7.6e-73 279.3 627 32.5
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.1e-63 248.8 615 31.4
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 9.0e-42 176.0 646 26.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 3.4e-41 174.1 749 26.7
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 1.6e-30 138.7 290 32.4
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 5.3e-26 123.6 304 28.9
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 1.7e-24 118.6 387 28.4
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 8.5e-24 116.3 277 30.3
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 8.5e-24 116.3 313 28.8
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 7.2e-23 113.2 274 30.3
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 2.7e-22 111.3 322 27.6
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 7.9e-22 109.8 370 25.7
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 2.3e-21 108.2 319 27.3
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 3.0e-21 107.8 387 24.5
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 5.1e-21 107.1 400 25.5
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 2.0e-20 105.1 294 27.2
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 2.6e-20 104.8 198 33.8
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 3.3e-20 104.4 312 25.6
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 4.4e-20 104.0 345 26.4
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 4.4e-20 104.0 284 26.8
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.3e-19 102.4 450 25.6
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 1.3e-19 102.4 362 25.4
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 5.3e-18 97.1 371 25.9
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 7.0e-18 96.7 368 26.4
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 1.6e-17 95.5 172 36.0
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 5.9e-17 93.6 319 24.8
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 8.5e-16 89.7 141 39.0
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 2.5e-15 88.2 316 24.4
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 3.2e-15 87.8 426 22.8
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 4.2e-15 87.4 362 24.3
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 5.5e-15 87.0 354 23.7
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 7.2e-15 86.7 316 23.7
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 7.2e-15 86.7 316 23.7
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 6.1e-14 83.6 316 23.1
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 6.1e-14 83.6 316 23.1
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 6.1e-14 83.6 316 23.1
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 3.0e-13 81.3 153 33.3
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 4.0e-13 80.9 225 26.7
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 8.8e-13 79.7 315 24.8
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 1.5e-12 79.0 319 23.8
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 2.6e-12 78.2 304 23.0
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.6e-12 78.2 378 25.4
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 5.7e-12 77.0 236 29.2
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 2.2e-11 75.1 198 23.7
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 6.3e-11 73.6 178 30.9
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 6.3e-11 73.6 148 29.7
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 8.2e-11 73.2 579 20.6
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 8.2e-11 73.2 403 21.1
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 1.4e-10 72.4 578 20.1
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 1.8e-10 72.0 246 26.0
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 3.1e-10 71.2 382 22.3
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 9.1e-10 69.7 145 25.5
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 1.2e-09 69.3 318 23.6
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 2.0e-09 68.6 264 26.9
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 7.7e-09 66.6 242 22.7
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 7.7e-09 66.6 213 29.6
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 7.7e-09 66.6 260 25.0
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.3e-08 65.9 242 22.7
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 1.3e-08 65.9 107 37.4
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.7e-08 65.5 380 23.7
Ca_26908_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 2.2e-08 65.1 265 24.9
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 2.2e-08 65.1 318 22.6
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 2.9e-08 64.7 200 22.0
CBR_g73271 Chara braunii HOM05D008307 ORTHO05D010374 8.5e-08 63.2 131 31.3
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 1.1e-07 62.8 150 27.3
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 2.5e-07 61.6 206 21.8
COL.COLO4_24338 Corchorus olitorius HOM05D000622 ORTHO05D000475 4.2e-07 60.8 132 29.5
Gohir.A11G033400 Gossypium hirsutum HOM05D000622 ORTHO05D000475 5.5e-07 60.5 84 36.9
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 5.5e-07 60.5 150 25.3
Gohir.D11G036800 Gossypium hirsutum HOM05D000622 ORTHO05D000475 1.2e-06 59.3 84 36.9
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.6e-06 58.9 143 28.0
CiPaw.14G039000 Carya illinoinensis HOM05D000622 ORTHO05D000475 2.1e-06 58.5 259 26.3
Ciclev10020020m.g Citrus clementina HOM05D000622 ORTHO05D000475 2.1e-06 58.5 87 35.6
Ca_03469_v3 Cicer arietinum L. HOM05D000622 ORTHO05D000475 4.7e-06 57.4 124 29.8
Glyma.18G159100 Glycine max HOM05D000622 ORTHO05D000475 4.7e-06 57.4 253 25.7
Gorai.007G039600 Gossypium raimondii HOM05D000622 ORTHO05D000475 4.7e-06 57.4 84 35.7
THA.LOC104804628 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 6.1e-06 57.0 90 32.2
BcaB06g26716 Brassica carinata HOM05D000622 ORTHO05D000475 8.0e-06 56.6 100 31.0
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 8.0e-06 56.6 225 25.3
Gohir.A01G012800 Gossypium hirsutum HOM05D002658 ORTHO05D003000 8.0e-06 56.6 199 27.1


User provided reference genes

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