Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 4.5e-205 717.6 340 100.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 6.5e-79 298.5 298 51.3
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 3.7e-74 282.7 296 45.9
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.1e-70 271.2 299 46.5
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 2.5e-70 270.0 299 45.5
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.2e-69 267.7 300 46.0
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 1.6e-69 267.3 302 44.4
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 2.1e-69 266.9 299 45.2
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 2.1e-69 266.9 296 43.2
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 4.6e-69 265.8 301 45.2
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 4.6e-69 265.8 312 44.6
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 6.1e-69 265.4 319 42.6
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 7.9e-69 265.0 302 44.4
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.4e-68 264.2 302 43.4
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.4e-68 264.2 296 45.3
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.8e-68 263.8 294 45.9
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.8e-68 263.8 294 45.9
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.3e-68 263.5 296 45.6
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 3.9e-68 262.7 310 43.9
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 5.1e-68 262.3 299 43.8
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 6.7e-68 261.9 299 45.5
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 6.7e-68 261.9 297 45.8
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 8.8e-68 261.5 296 45.3
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 1.1e-67 261.2 307 41.7
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 1.1e-67 261.2 299 44.1
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 4.3e-67 259.2 297 44.4
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 7.4e-67 258.5 296 44.3
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.3e-66 257.7 302 43.0
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.3e-66 257.7 296 43.2
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.7e-66 257.3 296 43.9
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.7e-66 257.3 296 44.9
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 2.8e-66 256.5 300 44.0
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 6.3e-66 255.4 295 43.1
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 1.8e-65 253.8 297 42.8
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.4e-65 253.4 297 44.1
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 2.4e-65 253.4 299 42.5
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 2.4e-65 253.4 299 42.5
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.1e-65 253.1 299 43.1
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 3.1e-65 253.1 299 44.1
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 3.1e-65 253.1 300 43.3
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 4.1e-65 252.7 321 41.4
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 6.9e-65 251.9 280 45.0
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 9.1e-65 251.5 295 42.7
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 2.0e-64 250.4 294 43.5
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.0e-64 250.4 306 42.8
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 2.6e-64 250.0 300 43.0
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.6e-64 250.0 295 42.0
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 3.4e-64 249.6 301 42.2
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 3.4e-64 249.6 295 42.4
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 5.9e-64 248.8 295 41.7
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 7.7e-64 248.4 295 43.4
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 7.7e-64 248.4 299 42.8
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 1.0e-63 248.1 298 42.3
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.0e-63 248.1 299 42.1
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.0e-63 248.1 299 43.1
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.0e-63 248.1 296 41.9
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.3e-63 247.7 295 41.0
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.3e-63 247.7 312 42.0
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.3e-63 247.7 281 43.4
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.7e-63 247.3 295 42.7
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.7e-63 247.3 283 44.5
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.2e-63 246.9 297 41.8
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 3.8e-63 246.1 297 42.1
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 5.0e-63 245.7 299 41.5
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 6.5e-63 245.4 294 42.9
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 6.5e-63 245.4 295 42.0
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 6.5e-63 245.4 314 40.4
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 8.5e-63 245.0 295 42.0
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.9e-62 243.8 299 41.8
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 4.2e-62 242.7 298 40.9
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.6e-61 240.7 291 43.3
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 1.6e-61 240.7 298 40.9
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.6e-61 240.7 298 42.3
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 2.1e-61 240.4 346 38.7
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.7e-61 240.0 297 41.1
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.7e-61 240.0 294 42.5
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 2.7e-61 240.0 333 39.6
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.6e-61 239.6 299 42.5
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 3.6e-61 239.6 298 41.3
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 7.9e-61 238.4 298 41.3
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.0e-60 238.0 294 42.5
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 1.0e-60 238.0 295 42.4
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 1.4e-60 237.7 298 41.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.4e-60 237.7 303 42.6
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 2.3e-60 236.9 281 43.1
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 3.9e-60 236.1 301 42.5
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.1e-59 234.6 279 43.4
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.5e-59 234.2 281 42.3
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 7.4e-59 231.9 287 42.5
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 9.7e-59 231.5 314 39.2
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 9.7e-59 231.5 315 39.4
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 1.3e-58 231.1 300 40.0
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 1.3e-58 231.1 279 41.9
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.7e-58 230.7 329 39.5
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 8.2e-58 228.4 321 39.6
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.4e-57 227.6 298 39.9
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 1.8e-57 227.3 301 40.5
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 5.3e-57 225.7 277 43.7
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.2e-56 224.6 315 38.7
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 2.6e-56 223.4 280 41.1
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 4.5e-56 222.6 303 42.6
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 1.0e-55 221.5 295 40.3
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.0e-55 221.5 278 41.4
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 1.3e-55 221.1 292 39.7
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 5.0e-55 219.2 299 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 1.2e-53 214.5 218 49.5
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 1.4e-52 211.1 297 39.7
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.4e-51 206.1 323 37.5
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 1.7e-50 204.1 294 39.5
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.4e-49 201.1 250 40.4
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 5.3e-49 199.1 299 37.1
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 2.0e-40 170.6 278 34.5
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 3.8e-39 166.4 303 33.7
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 7.2e-38 162.2 257 33.5
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.5e-35 154.5 192 41.1
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.6e-35 153.7 270 33.0
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 8.3e-34 148.7 219 35.2
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 2.3e-28 130.6 146 43.2
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.6e-24 117.9 207 32.9
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 1.2e-21 108.2 126 41.3
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 4.4e-19 99.8 89 51.7
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 4.4e-19 99.8 84 56.0
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 7.5e-19 99.0 240 29.2
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.1e-12 78.6 125 36.8
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 4.9e-10 69.7 71 45.1


User provided reference genes

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