Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_14900 Physcomitrium patens HOM05D002870 ORTHO05D310745 2.9e-66 255.0 122 100.0
Pp3c5_8550 Physcomitrium patens HOM05D002870 ORTHO05D003241 3.3e-17 92.0 119 47.9
Pp3c16_14150 Physcomitrium patens HOM05D002870 ORTHO05D003241 1.7e-13 79.7 118 39.0
Mapoly0142s0031 Marchantia polymorpha HOM05D002870 ORTHO05D003241 2.9e-13 79.0 116 43.1
SMO118G0076 Selaginella moellendorffii HOM05D002870 ORTHO05D003241 4.9e-13 78.2 125 40.0
Lsat_1_v5_gn_9_103381 Lactuca sativa HOM05D002870 ORTHO05D003241 5.4e-12 74.7 118 40.7
RcHm_v2.0_Chr5g0027151 Rosa chinensis HOM05D002870 ORTHO05D003241 7.1e-12 74.3 123 39.8
ECA240G4166 Erigeron canadensis HOM05D002870 ORTHO05D003241 1.2e-11 73.6 122 37.7
Aa31LG4G2640 Aethionema arabicum HOM05D002870 ORTHO05D003241 2.1e-11 72.8 122 36.9
RcHm_v2.0_Chr5g0027251 Rosa chinensis HOM05D002870 ORTHO05D003241 2.1e-11 72.8 123 39.0
SEGI_07160 Sequoiadendron giganteum HOM05D002870 ORTHO05D003241 2.1e-11 72.8 117 36.8
CSS0034829 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 2.7e-11 72.4 119 37.8
CSS0048151 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 2.7e-11 72.4 119 37.8
Cc05_g10040 Coffea canephora HOM05D002870 ORTHO05D003241 2.7e-11 72.4 119 38.7
Atru.chr2.1829 Acer truncatum HOM05D002870 ORTHO05D003241 3.5e-11 72.0 119 37.8
BolC6t39695H Brassica oleracea HOM05D002870 ORTHO05D003241 3.5e-11 72.0 126 37.3
BraA07t31401Z Brassica rapa HOM05D002870 ORTHO05D003241 3.5e-11 72.0 126 37.3
HanXRQChr13g0389791 Helianthus annuus HOM05D002870 ORTHO05D003241 3.5e-11 72.0 118 39.0
Manes.15G124100 Manihot esculenta HOM05D002870 ORTHO05D003241 3.5e-11 72.0 119 38.7
Sed0003019 Sechium edule HOM05D002870 ORTHO05D003241 3.5e-11 72.0 119 37.8
MSTRG.14781 Avicennia marina HOM05D002870 ORTHO05D003241 4.6e-11 71.6 123 37.4
Migut.H01352 Erythranthe guttata HOM05D002870 ORTHO05D003241 4.6e-11 71.6 126 35.7
Os03g0733800 Oryza sativa ssp. japonica HOM05D002870 ORTHO05D003241 4.6e-11 71.6 118 39.0
Zm00001eb215480 Zea mays HOM05D002870 ORTHO05D003241 4.6e-11 71.6 119 37.8
AL2G31950 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 6.0e-11 71.2 122 36.9
AT1G72280 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 6.0e-11 71.2 122 36.9
Thhalv10018491m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 6.0e-11 71.2 122 36.9
Medtr2g048900 Medicago truncatula HOM05D002870 ORTHO05D003241 6.0e-11 71.2 123 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1103 Anthoceros agrestis HOM05D002870 ORTHO05D003241 7.9e-11 70.9 118 38.1
BcaB03g14971 Brassica carinata HOM05D002870 ORTHO05D003241 7.9e-11 70.9 122 36.9
A07p38400 Brassica napus HOM05D002870 ORTHO05D003241 7.9e-11 70.9 122 36.9
CANSAT56G1661 Cannabis sativa HOM05D002870 ORTHO05D003241 7.9e-11 70.9 123 36.6
CANSAT56G2737 Cannabis sativa HOM05D002870 ORTHO05D003241 7.9e-11 70.9 123 36.6
CARHR133700 Cardamine hirsuta HOM05D002870 ORTHO05D003241 7.9e-11 70.9 120 38.3
Ca_24490_v3 Cicer arietinum L. HOM05D002870 ORTHO05D003241 7.9e-11 70.9 131 36.6
CsaV3_6G051910 Cucumis sativus L. HOM05D002870 ORTHO05D003241 7.9e-11 70.9 119 37.8
RcHm_v2.0_Chr5g0027131 Rosa chinensis HOM05D002870 ORTHO05D003241 7.9e-11 70.9 119 37.8
Sp5g27350 Schrenkiella parvula HOM05D002870 ORTHO05D003241 7.9e-11 70.9 122 36.9
Zm00001eb056320 Zea mays HOM05D002870 ORTHO05D003241 7.9e-11 70.9 119 37.8
CARHR065120 Cardamine hirsuta HOM05D002870 ORTHO05D003241 1.0e-10 70.5 122 36.9
ClCG01G024790 Citrullus lanatus HOM05D002870 ORTHO05D003241 1.0e-10 70.5 119 37.8
MELO3C007116.2 Cucumis melo HOM05D002870 ORTHO05D003241 1.0e-10 70.5 119 37.8
Lj6g0013815 Lotus japonicus HOM05D002870 ORTHO05D003241 1.0e-10 70.5 118 33.9
Psat1g019840 Pisum sativum HOM05D002870 ORTHO05D003241 1.0e-10 70.5 118 38.1
RcHm_v2.0_Chr5g0014551 Rosa chinensis HOM05D002870 ORTHO05D003241 1.0e-10 70.5 119 37.0
Sc03g0007830 Simmondsia chinensis HOM05D002870 ORTHO05D003241 1.0e-10 70.5 119 36.1
ECA236G1108 Erigeron canadensis HOM05D002870 ORTHO05D003241 1.3e-10 70.1 122 36.1
Eucgr.D00278 Eucalyptus grandis HOM05D002870 ORTHO05D003241 1.3e-10 70.1 119 37.0
Lsat_1_v5_gn_7_99481 Lactuca sativa HOM05D002870 ORTHO05D003241 1.3e-10 70.1 118 38.1
Manes.17G073100 Manihot esculenta HOM05D002870 ORTHO05D003241 1.3e-10 70.1 119 37.8
Hund10319 Selenicereus undatus HOM05D002870 ORTHO05D003241 1.3e-10 70.1 119 37.0
Carub.0002s1908 Capsella rubella HOM05D002870 ORTHO05D003241 1.8e-10 69.7 122 36.1
Oeu031301.1 Olea europaea HOM05D002870 ORTHO05D003241 1.8e-10 69.7 121 35.5
PSO541G4247 Papaver somniferum HOM05D002870 ORTHO05D003241 1.8e-10 69.7 119 37.0
AL4G36270 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 2.3e-10 69.3 120 37.5
CBR_g58818 Chara braunii HOM05D002870 ORTHO05D003241 2.3e-10 69.3 109 39.4
Dinv21534 Davidia involucrata HOM05D002870 ORTHO05D003241 2.3e-10 69.3 119 37.0
Lalb_Chr08g0233281 Lupinus albus HOM05D002870 ORTHO05D003241 2.3e-10 69.3 119 37.0
PSO675G5265 Papaver somniferum HOM05D002870 ORTHO05D003241 2.3e-10 69.3 119 37.0
unitig_21.g20643 Utricularia gibba HOM05D002870 ORTHO05D003241 2.3e-10 69.3 122 37.7
C06p46490 Brassica napus HOM05D002870 ORTHO05D003241 3.0e-10 68.9 122 36.1
Potri.001G436100 Populus trichocarpa HOM05D002870 ORTHO05D003241 3.0e-10 68.9 119 37.0
PGR083G1793 Punica granatum HOM05D002870 ORTHO05D003241 3.0e-10 68.9 119 36.1
QL05p055495 Quercus lobata HOM05D002870 ORTHO05D003241 3.0e-10 68.9 119 35.3
THA.LOC104812282 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 3.0e-10 68.9 119 37.0
TPR.G40100 Trifolium pratense HOM05D002870 ORTHO05D003241 3.0e-10 68.9 122 36.9
HPP92_015880 Vanilla planifolia HOM05D002870 ORTHO05D003241 3.0e-10 68.9 119 37.0
BcaC08g46674 Brassica carinata HOM05D002870 ORTHO05D003241 3.9e-10 68.6 122 35.2
CANSAT35G1212 Cannabis sativa HOM05D002870 ORTHO05D003241 3.9e-10 68.6 122 36.9
Glyma.15G194900 Glycine max HOM05D002870 ORTHO05D003241 3.9e-10 68.6 119 35.3
Lj1C805G10 Lonicera japonica HOM05D002870 ORTHO05D003241 3.9e-10 68.6 119 37.0
MD05G1280900 Malus domestica HOM05D002870 ORTHO05D003241 3.9e-10 68.6 119 37.0
Nn3g20427 Nelumbo nucifera HOM05D002870 ORTHO05D003241 3.9e-10 68.6 119 36.1
TAR627G0985 Trochodendron aralioides HOM05D002870 ORTHO05D003241 3.9e-10 68.6 119 37.0
VMungo1309G2492 Vigna mungo HOM05D002870 ORTHO05D003241 3.9e-10 68.6 123 35.0
CAN.G585.1 Capsicum annuum HOM05D002870 ORTHO05D003241 5.1e-10 68.2 118 38.1
Ca_02563_v3 Cicer arietinum L. HOM05D002870 ORTHO05D003241 5.1e-10 68.2 126 35.7
DCAR_027899 Daucus carota HOM05D002870 ORTHO05D003241 5.1e-10 68.2 120 36.7
MD10G1259300 Malus domestica HOM05D002870 ORTHO05D003241 5.1e-10 68.2 118 37.3
Atru.chr10.1158 Acer truncatum HOM05D002870 ORTHO05D003241 6.7e-10 67.8 119 36.1
Cfa000918 Carpinus fangiana HOM05D002870 ORTHO05D003241 6.7e-10 67.8 119 36.1
Glyma.09G086800 Glycine max HOM05D002870 ORTHO05D003241 6.7e-10 67.8 119 34.5
Phvul.009G215600 Phaseolus vulgaris HOM05D002870 ORTHO05D003241 6.7e-10 67.8 123 35.0
Rhsim06G0183700 Rhododendron simsii HOM05D002870 ORTHO05D003241 6.7e-10 67.8 128 36.7
Solyc07g056390.4 Solanum lycopersicum HOM05D002870 ORTHO05D003241 6.7e-10 67.8 118 38.1
Sopen07g029760 Solanum pennellii HOM05D002870 ORTHO05D003241 6.7e-10 67.8 118 38.1
Actinidia12331 Actinidia chinensis HOM05D002870 ORTHO05D003241 8.7e-10 67.4 119 35.3
Aa31LG5G20640 Aethionema arabicum HOM05D002870 ORTHO05D003241 8.7e-10 67.4 120 36.7
Aa31LG5G20700 Aethionema arabicum HOM05D002870 ORTHO05D003241 8.7e-10 67.4 120 36.7
CDE07G2073 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 8.7e-10 67.4 120 34.2
Haze_05638 Corylus avellana HOM05D002870 ORTHO05D003241 8.7e-10 67.4 119 36.1
Dinv26639 Davidia involucrata HOM05D002870 ORTHO05D003241 8.7e-10 67.4 119 37.0
HanXRQChr11g0330001 Helianthus annuus HOM05D002870 ORTHO05D003241 8.7e-10 67.4 121 36.4
AT2G38960 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 1.1e-09 67.0 120 36.7
MSTRG.12854 Avicennia marina HOM05D002870 ORTHO05D003241 1.1e-09 67.0 119 35.3
Carub.0004s2099 Capsella rubella HOM05D002870 ORTHO05D003241 1.1e-09 67.0 120 36.7
Ciclev10015325m.g Citrus clementina HOM05D002870 ORTHO05D003241 1.1e-09 67.0 119 36.1
DCAR_017560 Daucus carota HOM05D002870 ORTHO05D003241 1.1e-09 67.0 122 36.1
Hma1.2p1_0198F.1_g085490 Hydrangea macrophylla HOM05D002870 ORTHO05D003241 1.1e-09 67.0 119 36.1
Lalb_Chr11g0073351 Lupinus albus HOM05D002870 ORTHO05D003241 1.1e-09 67.0 119 35.3
TWI53G0974 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 1.1e-09 67.0 119 36.1
GSVIVG01020501001 Vitis vinifera HOM05D002870 ORTHO05D003241 1.1e-09 67.0 123 35.8
Actinidia01571 Actinidia chinensis HOM05D002870 ORTHO05D003241 1.5e-09 66.6 121 33.9
Aqoxy1G01676 Aquilegia oxysepala HOM05D002870 ORTHO05D003241 1.5e-09 66.6 119 37.0
Sabra16G0290200 Salix brachista HOM05D002870 ORTHO05D003241 1.5e-09 66.6 119 36.1
TWI09G1176 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 1.5e-09 66.6 119 35.3
vmacro12028 Vaccinium macrocarpon HOM05D002870 ORTHO05D003241 1.5e-09 66.6 118 36.4
Dinv21345 Davidia involucrata HOM05D002870 ORTHO05D003241 1.9e-09 66.2 119 36.1
FAN16G0159 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.9e-09 66.2 119 35.3
FAN16G0642 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.9e-09 66.2 119 35.3
FAN16G3323 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.9e-09 66.2 119 35.3
FAN21G1493 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.9e-09 66.2 122 35.2
FAN25G3158 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.9e-09 66.2 119 35.3
Sp4g21330 Schrenkiella parvula HOM05D002870 ORTHO05D003241 1.9e-09 66.2 120 37.5
SGA_v2.0_scaffold130G34240 Striga asiatica HOM05D002870 ORTHO05D003241 1.9e-09 66.2 120 36.7
DCAR_021067 Daucus carota HOM05D002870 ORTHO05D003241 2.5e-09 65.9 123 35.8
DCAR_021069 Daucus carota HOM05D002870 ORTHO05D003241 2.5e-09 65.9 123 35.8
Duzib235G0832 Durio zibethinus HOM05D002870 ORTHO05D003241 2.5e-09 65.9 118 35.6
Potri.011G139900 Populus trichocarpa HOM05D002870 ORTHO05D003241 2.5e-09 65.9 119 37.0
THA.LOC104812866 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 2.5e-09 65.9 118 32.2
BcaC02g12013 Brassica carinata HOM05D002870 ORTHO05D003241 3.3e-09 65.5 122 36.1
A05p07240 Brassica napus HOM05D002870 ORTHO05D003241 3.3e-09 65.5 122 36.1
C04p08700 Brassica napus HOM05D002870 ORTHO05D003241 3.3e-09 65.5 123 37.4
Eucgr.F03193 Eucalyptus grandis HOM05D002870 ORTHO05D003241 3.3e-09 65.5 120 35.8
PGSC0003DMG400004304 Solanum tuberosum HOM05D002870 ORTHO05D003241 3.3e-09 65.5 119 35.3
Actinidia20595 Actinidia chinensis HOM05D002870 ORTHO05D003241 4.3e-09 65.1 119 36.1
BolC4t22462H Brassica oleracea HOM05D002870 ORTHO05D003241 4.3e-09 65.1 123 37.4
BraA05t19689Z Brassica rapa HOM05D002870 ORTHO05D003241 4.3e-09 65.1 122 36.1
Gohir.A05G146900 Gossypium hirsutum HOM05D002870 ORTHO05D003241 4.3e-09 65.1 118 36.4
Gohir.D05G149400 Gossypium hirsutum HOM05D002870 ORTHO05D003241 4.3e-09 65.1 118 36.4
Gohir.D06G143800 Gossypium hirsutum HOM05D002870 ORTHO05D003241 4.3e-09 65.1 119 36.1
Gorai.009G153400 Gossypium raimondii HOM05D002870 ORTHO05D003241 4.3e-09 65.1 118 36.4
Gorai.010G167600 Gossypium raimondii HOM05D002870 ORTHO05D003241 4.3e-09 65.1 119 36.1
Peaxi162Scf00111g00628 Petunia axillaris HOM05D002870 ORTHO05D003241 4.3e-09 65.1 116 37.1
Sabra11G0126000 Salix brachista HOM05D002870 ORTHO05D003241 4.3e-09 65.1 123 35.8
ATR0665G063 Amborella trichopoda HOM05D002870 ORTHO05D003241 5.6e-09 64.7 119 35.3
COL.COLO4_31032 Corchorus olitorius HOM05D002870 ORTHO05D003241 5.6e-09 64.7 118 35.6
FvH4_3g05200 Fragaria vesca HOM05D002870 ORTHO05D003241 5.6e-09 64.7 119 34.5
FAN11G2808 Fragaria x ananassa HOM05D002870 ORTHO05D003241 5.6e-09 64.7 119 34.5
Gohir.A06G139100 Gossypium hirsutum HOM05D002870 ORTHO05D003241 5.6e-09 64.7 119 36.1
Lj1A1170T29 Lonicera japonica HOM05D002870 ORTHO05D003241 5.6e-09 64.7 123 35.0
Sabra16G0291300 Salix brachista HOM05D002870 ORTHO05D003241 5.6e-09 64.7 119 36.1
arahy.Tifrunner.gnm1.ann1.TYZ9EK Arachis hypogaea HOM05D002870 ORTHO05D003241 7.4e-09 64.3 118 33.1
arahy.Tifrunner.gnm1.ann1.X554XP Arachis hypogaea HOM05D002870 ORTHO05D003241 7.4e-09 64.3 118 33.1
BcaB02g09170 Brassica carinata HOM05D002870 ORTHO05D003241 7.4e-09 64.3 122 35.2
Ciclev10019948m.g Citrus clementina HOM05D002870 ORTHO05D003241 7.4e-09 64.3 119 35.3
Lj1g0022756 Lotus japonicus HOM05D002870 ORTHO05D003241 7.4e-09 64.3 119 34.5
Nitab4.5_0001612g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 7.4e-09 64.3 117 34.2
Nitab4.5_0004166g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 7.4e-09 64.3 117 34.2
SalBow7G3978 Salvia bowleyana HOM05D002870 ORTHO05D003241 7.4e-09 64.3 119 35.3
SalBow7G4695 Salvia bowleyana HOM05D002870 ORTHO05D003241 7.4e-09 64.3 119 35.3
Thecc.06G146800 Theobroma cacao HOM05D002870 ORTHO05D003241 7.4e-09 64.3 118 35.6
EL10Ac3g06812 Beta vulgaris HOM05D002870 ORTHO05D003241 9.6e-09 63.9 122 36.1
AUR62013963 Chenopodium quinoa HOM05D002870 ORTHO05D003241 9.6e-09 63.9 118 34.7
MBI03_g18945_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 9.6e-09 63.9 119 34.5
Nitab4.5_0001594g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 9.6e-09 63.9 123 34.1
Peaxi162Scf00045g02438 Petunia axillaris HOM05D002870 ORTHO05D003241 9.6e-09 63.9 123 35.0
CiPaw.10G089800 Carya illinoinensis HOM05D002870 ORTHO05D003241 1.3e-08 63.5 119 35.3
MBI16_g18970_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 1.6e-08 63.2 119 34.5
C06p46440 Brassica napus HOM05D002870 ORTHO05D003241 2.1e-08 62.8 125 34.4
BolC6t39692H Brassica oleracea HOM05D002870 ORTHO05D003241 2.1e-08 62.8 125 34.4
CiPaw.09G121100 Carya illinoinensis HOM05D002870 ORTHO05D003241 2.1e-08 62.8 123 35.0
AUR62019652 Chenopodium quinoa HOM05D002870 ORTHO05D003241 2.1e-08 62.8 117 35.0
Nitab4.5_0009731g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 2.1e-08 62.8 119 35.3
GSVIVG01021532001 Vitis vinifera HOM05D002870 ORTHO05D003241 2.8e-08 62.4 119 34.5
Duzib192G0466 Durio zibethinus HOM05D002870 ORTHO05D003241 1.1e-07 60.5 118 33.9
HanXRQChr09g0257511 Helianthus annuus HOM05D002870 ORTHO05D003241 1.8e-07 59.7 120 34.2
AagrBONN_evm.TU.Sc2ySwM_340.181 Anthoceros agrestis HOM05D002870 ORTHO05D003241 2.4e-07 59.3 117 35.0
EL10Ac4g08526 Beta vulgaris HOM05D002870 ORTHO05D003241 3.1e-07 58.9 118 33.9
Ah.06g187400 Amaranthus hybridus HOM05D002870 ORTHO05D003241 4.0e-07 58.5 120 34.2
SalBow6G5801 Salvia bowleyana HOM05D002870 ORTHO05D003241 4.0e-07 58.5 114 32.5
Rhsim13G0116600 Rhododendron simsii HOM05D002870 ORTHO05D003241 5.3e-07 58.2 130 33.1
CSS0027530 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 6.9e-07 57.8 119 32.8
Cfa022380 Carpinus fangiana HOM05D002870 ORTHO05D003241 3.4e-06 55.5 117 31.6
Lalb_Chr19g0133501 Lupinus albus HOM05D002870 ORTHO05D003241 5.8e-06 54.7 157 29.3


User provided reference genes

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