Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 0.0e+00 1529.6 766 100.0
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.6e-245 852.4 769 60.3
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.6e-146 524.2 773 41.0
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 4.9e-143 512.7 751 39.0
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 6.6e-140 502.3 747 40.6
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 1.4e-89 335.1 693 32.5
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 4.5e-88 330.1 723 31.3
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 2.3e-71 274.6 718 29.7
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 6.3e-66 256.5 684 26.3
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 6.3e-66 256.5 591 29.3
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 2.4e-65 254.6 685 27.6
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 7.0e-65 253.1 616 30.2
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.7e-64 251.1 684 27.6
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 3.5e-64 250.8 657 28.3
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 7.8e-64 249.6 686 27.3
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 7.8e-64 249.6 746 25.6
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.0e-63 249.2 685 27.9
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.0e-63 249.2 673 26.7
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 1.0e-63 249.2 575 29.4
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 1.0e-63 249.2 633 28.3
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 1.3e-63 248.8 582 27.8
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 1.3e-63 248.8 721 27.2
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.3e-63 248.1 596 28.5
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 6.6e-63 246.5 669 27.4
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 6.6e-63 246.5 583 28.6
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 8.6e-63 246.1 683 27.5
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 1.1e-62 245.7 693 27.4
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 1.5e-62 245.4 668 28.4
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.5e-62 245.4 717 27.2
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 1.5e-62 245.4 689 27.9
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.5e-62 245.4 716 26.5
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 2.5e-62 244.6 701 27.8
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 2.5e-62 244.6 707 27.2
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 3.3e-62 244.2 607 27.3
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.3e-62 243.8 673 26.7
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 4.3e-62 243.8 673 26.7
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 5.6e-62 243.4 722 27.1
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 5.6e-62 243.4 670 26.1
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 7.3e-62 243.0 701 27.1
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 7.3e-62 243.0 721 26.9
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.3e-62 243.0 667 27.3
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 9.5e-62 242.7 686 28.3
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 9.5e-62 242.7 707 26.6
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 1.2e-61 242.3 693 27.3
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 1.2e-61 242.3 693 27.3
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 2.1e-61 241.5 648 26.4
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.8e-61 241.1 680 27.2
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 2.8e-61 241.1 667 27.1
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 2.8e-61 241.1 648 26.4
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 4.7e-61 240.4 637 26.8
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 4.7e-61 240.4 672 28.3
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 8.0e-61 239.6 789 25.9
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 8.0e-61 239.6 669 26.2
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 8.0e-61 239.6 706 27.2
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.8e-60 238.4 675 28.0
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.8e-60 238.4 667 27.0
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 2.3e-60 238.0 592 28.0
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 3.1e-60 237.7 724 26.9
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 4.0e-60 237.3 656 27.7
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 4.0e-60 237.3 668 27.7
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 4.0e-60 237.3 697 26.4
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 5.2e-60 236.9 664 26.1
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 5.2e-60 236.9 659 26.9
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 6.8e-60 236.5 637 27.8
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 6.8e-60 236.5 720 27.4
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.2e-59 235.7 722 26.5
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 1.2e-59 235.7 662 27.8
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 1.5e-59 235.3 666 26.6
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 2.6e-59 234.6 675 26.8
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 2.6e-59 234.6 570 28.1
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 4.4e-59 233.8 758 26.1
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 5.8e-59 233.4 629 28.9
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 7.5e-59 233.0 674 26.6
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 9.8e-59 232.6 760 25.9
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.3e-58 232.3 669 26.3
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 2.2e-58 231.5 711 26.2
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 2.9e-58 231.1 753 27.2
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 3.7e-58 230.7 581 26.7
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.7e-58 230.7 580 29.1
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 4.9e-58 230.3 693 26.6
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 4.9e-58 230.3 640 27.2
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 6.4e-58 229.9 622 25.9
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 6.4e-58 229.9 681 27.3
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 8.3e-58 229.6 574 27.9
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-57 229.2 693 26.6
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 1.1e-57 229.2 648 27.0
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 1.4e-57 228.8 734 25.6
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 1.4e-57 228.8 746 26.7
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.4e-57 228.8 722 26.9
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 1.9e-57 228.4 666 27.2
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 1.9e-57 228.4 764 27.1
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 1.9e-57 228.4 658 26.7
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 3.2e-57 227.6 571 28.2
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 4.1e-57 227.3 601 26.3
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 5.4e-57 226.9 668 27.5
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 5.4e-57 226.9 658 26.3
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 9.2e-57 226.1 648 27.0
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 1.6e-56 225.3 711 26.7
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 2.0e-56 224.9 569 27.2
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 2.0e-56 224.9 762 25.2
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 3.5e-56 224.2 674 27.0
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 4.6e-56 223.8 673 27.0
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 1.3e-55 222.2 586 27.6
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 3.0e-55 221.1 752 25.9
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.0e-55 221.1 627 26.5
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.9e-55 220.7 622 27.0
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 5.0e-55 220.3 642 26.8
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 5.0e-55 220.3 652 27.0
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 6.6e-55 219.9 740 26.6
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 8.6e-55 219.5 753 25.5
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.5e-54 218.8 593 27.7
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 1.5e-54 218.8 621 27.7
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 3.3e-54 217.6 683 24.2
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 3.3e-54 217.6 586 27.3
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 4.3e-54 217.2 662 27.2
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 4.3e-54 217.2 631 26.9
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 5.6e-54 216.9 670 27.3
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 9.5e-54 216.1 631 26.9
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 1.2e-53 215.7 638 27.9
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 1.6e-53 215.3 623 26.6
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 3.6e-53 214.2 613 28.1
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 4.7e-53 213.8 599 28.5
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 6.2e-53 213.4 693 25.7
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 1.1e-52 212.6 693 25.7
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 1.4e-52 212.2 722 25.6
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 1.8e-52 211.8 577 27.9
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 2.3e-52 211.5 632 24.8
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 5.2e-52 210.3 575 27.5
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 6.8e-52 209.9 687 24.3
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 6.8e-52 209.9 665 25.1
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 2.0e-51 208.4 564 27.8
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.6e-51 208.0 591 27.4
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 3.4e-51 207.6 685 24.8
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 5.8e-51 206.8 684 25.0
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 9.8e-51 206.1 628 25.6
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.3e-50 205.7 627 27.4
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.7e-50 205.3 739 25.3
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 2.4e-49 201.4 699 25.5
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 2.1e-48 198.4 584 26.7
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 2.1e-48 198.4 693 26.0
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 1.2e-45 189.1 729 23.2
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 8.1e-45 186.4 572 27.6
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 1.1e-44 186.0 591 26.1
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 6.8e-44 183.3 303 32.0
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 6.4e-42 176.8 302 32.5
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 1.4e-41 175.6 309 32.7
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 9.2e-41 172.9 759 24.4
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 2.3e-39 168.3 314 31.8
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 8.6e-39 166.4 459 27.5
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 5.8e-35 153.7 337 32.0
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.1e-33 149.4 286 33.6
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 9.3e-33 146.4 944 20.3
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 6.0e-32 143.7 481 24.7
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 5.1e-31 140.6 620 23.4
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 5.6e-30 137.1 412 25.7
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 1.6e-29 135.6 453 26.0
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 4.8e-21 107.5 697 23.1
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 4.2e-17 94.4 139 37.4
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 9.3e-17 93.2 156 34.6
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 5.1e-15 87.4 315 24.1
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 9.6e-14 83.2 218 25.7
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 1.3e-13 82.8 123 35.8
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 1.4e-12 79.3 149 32.2
MCO11G907 Micromonas commoda HOM05D003493 ORTHO05D003980 1.8e-12 79.0 514 23.5
COL.COLO4_22900 Corchorus olitorius HOM05D003493 ORTHO05D003980 9.0e-12 76.6 122 31.1
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-11 75.5 160 31.2
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-11 75.5 160 31.2
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 2.6e-11 75.1 123 35.0
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 3.4e-11 74.7 160 30.6
Cre06.g285700 Chlamydomonas reinhardtii HOM05D003493 ORTHO05D003980 9.3e-09 66.6 112 26.8
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 1.5e-06 59.3 92 31.5
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 1.5e-06 59.3 153 31.4
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 5.7e-06 57.4 145 30.3


User provided reference genes

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