Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.0e-93 345.1 170 100.0
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.9e-28 127.5 202 43.1
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.4e-21 106.3 201 36.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.7e-17 92.8 185 36.2
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 8.1e-14 81.3 184 34.8
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 9.0e-13 77.8 184 33.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.5e-12 77.0 184 35.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.6e-12 76.3 210 32.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 4.5e-12 75.5 141 39.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 7.6e-12 74.7 209 32.1
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.3e-11 73.9 184 33.7
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.7e-11 73.6 184 33.7
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.7e-11 73.6 225 29.8
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.2e-11 73.2 184 33.7
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.2e-11 73.2 223 31.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.9e-11 72.8 184 32.1
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.9e-11 72.8 184 33.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.8e-11 72.4 184 32.1
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 3.8e-11 72.4 192 32.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 4.9e-11 72.0 183 32.8
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.9e-11 72.0 184 32.6
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 6.4e-11 71.6 184 33.2
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-10 70.9 184 32.1
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-10 70.9 184 32.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.9e-10 70.1 184 32.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.9e-10 70.1 184 33.2
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.4e-10 69.7 217 30.0
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.2e-10 69.3 184 31.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 3.2e-10 69.3 212 32.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 4.2e-10 68.9 186 32.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.2e-10 68.9 184 32.6
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 5.4e-10 68.6 184 30.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 5.4e-10 68.6 184 31.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 5.4e-10 68.6 184 30.4
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.4e-10 68.6 184 33.2
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 9.3e-10 67.8 201 29.9
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 9.3e-10 67.8 184 31.5
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 9.3e-10 67.8 183 30.6
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 9.3e-10 67.8 184 31.5
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.2e-09 67.4 212 29.2
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.6e-09 67.0 183 30.6
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.6e-09 67.0 184 30.4
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.6e-09 67.0 184 31.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.1e-09 66.6 184 32.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.1e-09 66.6 184 30.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.1e-09 66.6 184 31.5
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.7e-09 66.2 184 29.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.5e-09 65.9 184 30.4
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 3.5e-09 65.9 184 32.1
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.5e-09 65.9 184 31.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.5e-09 65.9 183 31.1
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 6.0e-09 65.1 159 34.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 7.9e-09 64.7 184 28.8
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.0e-08 64.3 184 30.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-08 64.3 175 32.6
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.0e-08 64.3 206 30.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.3e-08 63.9 184 32.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.3e-08 63.9 184 32.1
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.8e-08 63.5 212 31.1
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.8e-08 63.5 184 31.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.8e-08 63.5 185 28.6
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.8e-08 63.5 184 32.1
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.3e-08 63.2 168 33.3
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.3e-08 63.2 184 31.0
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 2.3e-08 63.2 184 32.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.0e-08 62.8 197 31.5
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.0e-08 62.8 185 28.6
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.0e-08 62.8 185 28.6
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.9e-08 62.4 184 31.5
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.9e-08 62.4 184 29.3
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 5.1e-08 62.0 185 31.4
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.1e-08 62.0 212 29.7
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.1e-08 62.0 211 30.3
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.7e-08 61.6 168 32.7
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 6.7e-08 61.6 175 32.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.7e-08 61.6 185 30.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 6.7e-08 61.6 184 32.1
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 8.7e-08 61.2 184 28.8
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 8.7e-08 61.2 184 30.4
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.1e-07 60.8 225 29.8
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.1e-07 60.8 183 29.5
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.1e-07 60.8 184 31.5
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.9e-07 60.1 184 29.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.5e-07 59.7 184 29.3
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 4.3e-07 58.9 184 29.9
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 4.3e-07 58.9 183 30.1
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.3e-07 58.9 183 31.1
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 5.6e-07 58.5 184 29.9
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.3e-06 57.4 183 30.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.6e-06 57.0 184 29.3
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-06 57.0 202 27.2
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.6e-06 57.0 183 29.0
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.1e-06 56.6 221 28.5
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 8.1e-06 54.7 184 29.9


User provided reference genes

Program Settings