Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.3e-292 1006.9 491 100.0
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.6e-123 446.0 373 60.3
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 7.3e-100 368.6 342 52.3
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.4e-98 364.4 362 53.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.5e-97 360.9 380 48.2
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.7e-96 357.5 396 47.7
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.7e-96 357.5 380 47.9
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.1e-95 354.8 382 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 4.2e-95 352.8 370 49.5
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 9.3e-95 351.7 370 48.1
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 1.2e-94 351.3 365 48.2
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.2e-94 351.3 374 47.6
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.6e-94 350.9 359 48.7
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 2.7e-94 350.1 365 48.8
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.7e-94 350.1 372 48.4
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 3.5e-94 349.7 384 46.6
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 6.0e-94 349.0 365 48.5
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.0e-93 348.2 370 47.6
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.3e-93 347.8 359 49.0
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 3.0e-93 346.7 405 44.4
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 3.0e-93 346.7 370 48.1
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 3.0e-93 346.7 383 47.5
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 5.1e-93 345.9 370 47.8
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 5.1e-93 345.9 387 46.8
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 6.7e-93 345.5 366 48.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 8.7e-93 345.1 370 48.4
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.5e-92 344.4 357 49.0
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 2.5e-92 343.6 367 47.4
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.5e-92 343.6 365 48.8
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.5e-92 343.6 359 48.7
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 3.3e-92 343.2 370 47.3
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 3.3e-92 343.2 388 46.4
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 5.6e-92 342.4 370 48.1
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 7.4e-92 342.0 370 47.0
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 7.4e-92 342.0 370 48.4
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 9.6e-92 341.7 359 48.7
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 9.6e-92 341.7 359 48.2
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 1.3e-91 341.3 370 47.8
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.3e-91 341.3 371 47.7
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.6e-91 340.9 365 47.1
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.6e-91 340.9 365 47.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.8e-91 340.1 358 47.5
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 2.8e-91 340.1 383 46.5
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 2.8e-91 340.1 370 46.5
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 3.7e-91 339.7 359 47.1
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 3.7e-91 339.7 397 44.8
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 4.8e-91 339.3 379 46.4
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 6.2e-91 339.0 368 47.3
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 6.2e-91 339.0 359 47.4
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.1e-90 338.2 370 46.8
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.1e-90 338.2 359 48.5
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.4e-90 337.8 365 46.8
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.8e-90 337.4 345 49.0
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 2.4e-90 337.0 379 45.9
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 4.0e-90 336.3 370 47.3
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 4.0e-90 336.3 374 46.8
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 9.0e-90 335.1 358 48.0
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.2e-89 334.7 365 47.4
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 3.4e-89 333.2 386 46.1
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 3.4e-89 333.2 373 45.6
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 3.4e-89 333.2 359 47.4
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.0e-88 331.6 358 47.8
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.0e-88 331.6 401 44.6
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.7e-88 330.9 365 46.8
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 3.8e-88 329.7 371 45.8
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 3.8e-88 329.7 358 45.5
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 6.5e-88 328.9 401 44.4
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 8.4e-88 328.6 370 46.8
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 8.4e-88 328.6 394 44.7
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 8.4e-88 328.6 386 45.1
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.1e-87 328.2 360 46.9
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.9e-87 327.4 380 46.1
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.5e-87 327.0 383 45.2
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 9.3e-87 325.1 359 47.9
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 2.7e-86 323.6 389 44.0
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.5e-86 323.2 420 42.4
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 6.0e-86 322.4 314 51.3
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.3e-85 321.2 391 45.0
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 2.3e-85 320.5 416 41.6
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 2.3e-85 320.5 378 45.0
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.5e-84 317.8 441 40.6
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 1.9e-84 317.4 343 46.9
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 3.7e-83 313.2 334 48.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.4e-82 311.2 375 43.5
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.6e-81 307.0 348 46.0
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 4.5e-81 306.2 340 46.5
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.8e-81 305.8 286 51.4
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.1e-79 301.6 327 48.3
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 4.2e-79 299.7 380 42.9
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 4.2e-79 299.7 370 43.5
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 7.2e-79 298.9 369 43.6
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.0e-77 293.5 380 42.1
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 8.7e-77 292.0 313 46.6
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.2e-72 277.3 380 41.3
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 8.5e-72 275.4 380 40.3
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.8e-69 267.7 418 38.0
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 5.9e-65 252.7 257 48.6
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.7e-64 251.1 399 38.3
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 5.5e-63 246.1 394 39.3
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 6.1e-62 242.7 329 41.3
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 3.9e-61 240.0 355 40.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.5e-60 238.0 266 46.2
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.0e-60 237.7 362 41.7
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.8e-58 231.1 167 61.7
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 7.2e-55 219.2 438 33.8
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.4e-50 204.9 259 43.2
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 5.0e-48 196.4 177 56.5
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 6.5e-48 196.1 177 56.5
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 8.0e-46 189.1 251 43.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 2.3e-45 187.6 177 53.1
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 8.8e-45 185.7 177 53.1
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.2e-44 185.3 239 40.6
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.7e-38 163.3 393 33.1
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 4.7e-38 163.3 182 46.2
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 4.7e-38 163.3 182 46.2
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.7e-32 144.8 145 52.4
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 3.6e-30 137.1 172 42.4
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.7e-30 136.7 92 62.0
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.0e-29 135.6 179 41.3
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 8.9e-29 132.5 90 67.8
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.6e-22 111.7 266 30.8
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.1e-22 111.3 131 46.6
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 1.4e-21 108.6 131 47.3
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.3e-19 102.1 217 33.6
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 9.8e-12 75.9 54 53.7
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 5.1e-08 63.5 44 65.9
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 9.5e-07 59.3 49 59.2


User provided reference genes

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