Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_11200 Physcomitrium patens HOM05D005329 ORTHO05D006858 8.8e-271 936.4 490 100.0
Pp3c5_19250 Physcomitrium patens HOM05D005329 ORTHO05D006858 2.3e-194 682.6 492 75.8
Mapoly0037s0028 Marchantia polymorpha HOM05D005329 ORTHO05D006858 2.2e-120 436.8 332 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5763 Anthoceros agrestis HOM05D005329 ORTHO05D006858 9.2e-119 431.4 303 71.3
SMO118G0360 Selaginella moellendorffii HOM05D005329 ORTHO05D006858 4.4e-113 412.5 303 68.0
SEGI_35106 Sequoiadendron giganteum HOM05D005329 ORTHO05D006858 1.3e-109 401.0 343 61.2
GSVIVG01027681001 Vitis vinifera HOM05D005329 ORTHO05D006858 3.3e-108 396.4 385 57.7
Cfa011170 Carpinus fangiana HOM05D005329 ORTHO05D006858 4.3e-108 396.0 331 62.8
COL.COLO4_12491 Corchorus olitorius HOM05D005329 ORTHO05D006858 9.6e-108 394.8 350 59.7
Gohir.D07G152900 Gossypium hirsutum HOM05D005329 ORTHO05D006858 9.6e-108 394.8 308 64.3
SGA_v2.0_scaffold153G36970 Striga asiatica HOM05D005329 ORTHO05D006858 9.6e-108 394.8 298 67.8
Lj6g0011922 Lotus japonicus HOM05D005329 ORTHO05D006858 2.1e-107 393.7 307 65.5
AUR62034758 Chenopodium quinoa HOM05D005329 ORTHO05D006858 2.8e-107 393.3 333 61.9
Gorai.001G175000 Gossypium raimondii HOM05D005329 ORTHO05D006858 2.8e-107 393.3 308 64.0
TWI23G1139 Tripterygium wilfordii HOM05D005329 ORTHO05D006858 3.6e-107 392.9 407 55.0
TAR375G0089 Trochodendron aralioides HOM05D005329 ORTHO05D006858 4.7e-107 392.5 341 61.0
Duzib133G0265 Durio zibethinus HOM05D005329 ORTHO05D006858 8.1e-107 391.7 350 60.3
Prupe.2G138300 Prunus persica HOM05D005329 ORTHO05D006858 1.1e-106 391.3 343 62.4
Thecc.01G382500 Theobroma cacao HOM05D005329 ORTHO05D006858 1.4e-106 391.0 350 59.4
Medtr3g466380 Medicago truncatula HOM05D005329 ORTHO05D006858 1.8e-106 390.6 314 62.7
arahy.Tifrunner.gnm1.ann1.UJ6N0S Arachis hypogaea HOM05D005329 ORTHO05D006858 2.4e-106 390.2 298 66.1
Lalb_Chr20g0117361 Lupinus albus HOM05D005329 ORTHO05D006858 2.4e-106 390.2 314 64.3
Manes.01G269000 Manihot esculenta HOM05D005329 ORTHO05D006858 2.4e-106 390.2 340 59.4
Atru.chr5.253 Acer truncatum HOM05D005329 ORTHO05D006858 3.1e-106 389.8 379 57.0
Eucgr.E01511 Eucalyptus grandis HOM05D005329 ORTHO05D006858 3.1e-106 389.8 349 59.6
Hma1.2p1_0072F.1_g038340 Hydrangea macrophylla HOM05D005329 ORTHO05D006858 3.1e-106 389.8 313 63.6
TPR.G24981 Trifolium pratense HOM05D005329 ORTHO05D006858 3.1e-106 389.8 314 63.4
VMungo0540G2212 Vigna mungo HOM05D005329 ORTHO05D006858 3.1e-106 389.8 306 65.7
Ca_15027_v3 Cicer arietinum L. HOM05D005329 ORTHO05D006858 6.8e-106 388.7 303 64.7
Nitab4.5_0012722g0010 Nicotiana tabacum HOM05D005329 ORTHO05D006858 6.8e-106 388.7 319 61.8
Phvul.006G076100 Phaseolus vulgaris HOM05D005329 ORTHO05D006858 8.9e-106 388.3 306 64.7
CANSAT56G1088 Cannabis sativa HOM05D005329 ORTHO05D006858 1.2e-105 387.9 342 60.5
MD07G1115700 Malus domestica HOM05D005329 ORTHO05D006858 1.2e-105 387.9 340 62.4
Peaxi162Scf00803g00018 Petunia axillaris HOM05D005329 ORTHO05D006858 1.2e-105 387.9 319 63.0
Sc24g0004030 Simmondsia chinensis HOM05D005329 ORTHO05D006858 1.2e-105 387.9 329 62.0
Ah.04g166190 Amaranthus hybridus HOM05D005329 ORTHO05D006858 1.5e-105 387.5 303 65.3
Glyma.18G055100 Glycine max HOM05D005329 ORTHO05D006858 1.5e-105 387.5 304 64.1
Nitab4.5_0000859g0250 Nicotiana tabacum HOM05D005329 ORTHO05D006858 1.5e-105 387.5 319 61.8
Potri.014G060100 Populus trichocarpa HOM05D005329 ORTHO05D006858 1.5e-105 387.5 389 55.3
PGR142G4306 Punica granatum HOM05D005329 ORTHO05D006858 1.5e-105 387.5 319 64.6
EL10Ac4g07683 Beta vulgaris HOM05D005329 ORTHO05D006858 5.8e-105 385.6 318 61.6
Aqoxy7G00752 Aquilegia oxysepala HOM05D005329 ORTHO05D006858 7.6e-105 385.2 298 65.8
CANSAT56G2474 Cannabis sativa HOM05D005329 ORTHO05D006858 7.6e-105 385.2 341 60.4
CiPaw.14G025800 Carya illinoinensis HOM05D005329 ORTHO05D006858 9.9e-105 384.8 365 57.3
CsaV3_6G009150 Cucumis sativus L. HOM05D005329 ORTHO05D006858 9.9e-105 384.8 354 59.3
Migut.B01596 Erythranthe guttata HOM05D005329 ORTHO05D006858 9.9e-105 384.8 306 64.7
MELO3C021145.2 Cucumis melo HOM05D005329 ORTHO05D006858 1.3e-104 384.4 341 60.1
ATR0807G181 Amborella trichopoda HOM05D005329 ORTHO05D006858 1.7e-104 384.0 298 65.8
CBR_g46453 Chara braunii HOM05D005329 ORTHO05D006858 1.7e-104 384.0 297 63.3
FAN06G0681 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.2e-104 383.6 345 59.7
Rhsim07G0031000 Rhododendron simsii HOM05D005329 ORTHO05D006858 3.8e-104 382.9 311 63.7
FAN06G1173 Fragaria x ananassa HOM05D005329 ORTHO05D006858 4.9e-104 382.5 345 59.4
Glyma.11G161400 Glycine max HOM05D005329 ORTHO05D006858 4.9e-104 382.5 328 61.0
Psat5g150560 Pisum sativum HOM05D005329 ORTHO05D006858 4.9e-104 382.5 329 61.1
SalBow5G1302 Salvia bowleyana HOM05D005329 ORTHO05D006858 4.9e-104 382.5 353 58.6
Nn6g33989 Nelumbo nucifera HOM05D005329 ORTHO05D006858 6.4e-104 382.1 339 60.2
vmacro13440 Vaccinium macrocarpon HOM05D005329 ORTHO05D006858 8.4e-104 381.7 336 59.2
FAN10G0345 Fragaria x ananassa HOM05D005329 ORTHO05D006858 1.1e-103 381.3 343 59.8
FAN10G0671 Fragaria x ananassa HOM05D005329 ORTHO05D006858 1.1e-103 381.3 343 59.8
Carub.0004s2776 Capsella rubella HOM05D005329 ORTHO05D006858 1.9e-103 380.6 327 59.3
CAN.G1469.16 Capsicum annuum HOM05D005329 ORTHO05D006858 2.4e-103 380.2 326 61.0
Sed0016036 Sechium edule HOM05D005329 ORTHO05D006858 2.4e-103 380.2 307 63.2
THA.LOC104817220 Tarenaya hassleriana HOM05D005329 ORTHO05D006858 2.4e-103 380.2 352 58.0
CSS0046286 Camellia sinensis var. sinensis HOM05D005329 ORTHO05D006858 4.2e-103 379.4 352 57.7
Ciclev10020384m.g Citrus clementina HOM05D005329 ORTHO05D006858 7.1e-103 378.6 313 62.9
PSO210G1941 Papaver somniferum HOM05D005329 ORTHO05D006858 7.1e-103 378.6 407 53.1
FAN03G0115 Fragaria x ananassa HOM05D005329 ORTHO05D006858 9.3e-103 378.3 343 59.2
arahy.Tifrunner.gnm1.ann1.6F7D9A Arachis hypogaea HOM05D005329 ORTHO05D006858 2.7e-102 376.7 317 61.8
AL4G44260 Arabidopsis lyrata HOM05D005329 ORTHO05D006858 3.5e-102 376.3 339 56.9
Sp4g27210 Schrenkiella parvula HOM05D005329 ORTHO05D006858 3.5e-102 376.3 324 59.6
Sopen01g036670 Solanum pennellii HOM05D005329 ORTHO05D006858 3.5e-102 376.3 392 54.3
MSTRG.20729 Avicennia marina HOM05D005329 ORTHO05D006858 4.6e-102 375.9 306 62.7
CBR_g3184 Chara braunii HOM05D005329 ORTHO05D006858 4.6e-102 375.9 304 62.8
Dinv44120 Davidia involucrata HOM05D005329 ORTHO05D006858 4.6e-102 375.9 347 58.8
Solyc01g090940.3 Solanum lycopersicum HOM05D005329 ORTHO05D006858 4.6e-102 375.9 392 54.1
RcHm_v2.0_Chr1g0349131 Rosa chinensis HOM05D005329 ORTHO05D006858 1.0e-101 374.8 350 58.0
Thhalv10001472m.g Eutrema salsugineum HOM05D005329 ORTHO05D006858 3.0e-101 373.2 343 56.9
AT2G45150 Arabidopsis thaliana HOM05D005329 ORTHO05D006858 6.6e-101 372.1 327 58.1
unitig_8.g3829 Utricularia gibba HOM05D005329 ORTHO05D006858 6.6e-101 372.1 331 58.3
Gohir.A07G146900 Gossypium hirsutum HOM05D005329 ORTHO05D006858 1.1e-100 371.3 295 63.1
BcaB01g03288 Brassica carinata HOM05D005329 ORTHO05D006858 1.9e-100 370.5 343 57.4
Cc02_g24400 Coffea canephora HOM05D005329 ORTHO05D006858 1.9e-100 370.5 339 58.7
Zm00001eb208740 Zea mays HOM05D005329 ORTHO05D006858 1.6e-99 367.5 302 63.6
HanXRQChr04g0123141 Helianthus annuus HOM05D005329 ORTHO05D006858 1.1e-98 364.8 320 60.3
Lsat_1_v5_gn_7_9240 Lactuca sativa HOM05D005329 ORTHO05D006858 1.4e-98 364.4 350 55.7
Zm00001eb230950 Zea mays HOM05D005329 ORTHO05D006858 1.8e-98 364.0 302 63.2
BcaC01g05155 Brassica carinata HOM05D005329 ORTHO05D006858 2.4e-98 363.6 333 56.5
HanXRQChr06g0169081 Helianthus annuus HOM05D005329 ORTHO05D006858 3.1e-98 363.2 341 57.8
Sabra14G0044000 Salix brachista HOM05D005329 ORTHO05D006858 4.0e-98 362.8 357 55.5
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 5.3e-98 362.5 336 59.2
Sp5g02620 Schrenkiella parvula HOM05D005329 ORTHO05D006858 1.2e-97 361.3 379 53.0
Carub.0005s2735 Capsella rubella HOM05D005329 ORTHO05D006858 9.9e-97 358.2 364 53.8
FAN01G1917 Fragaria x ananassa HOM05D005329 ORTHO05D006858 1.3e-96 357.8 332 58.1
QL04p038735 Quercus lobata HOM05D005329 ORTHO05D006858 1.3e-96 357.8 388 51.5
AT3G60620 Arabidopsis thaliana HOM05D005329 ORTHO05D006858 1.7e-96 357.5 345 55.4
Thhalv10006014m.g Eutrema salsugineum HOM05D005329 ORTHO05D006858 2.4e-95 353.6 386 51.8
ClCG06G003040 Citrullus lanatus HOM05D005329 ORTHO05D006858 1.6e-94 350.9 405 49.9
C08p35570 Brassica napus HOM05D005329 ORTHO05D006858 1.3e-93 347.8 322 56.5
A09p52830 Brassica napus HOM05D005329 ORTHO05D006858 5.1e-93 345.9 366 53.0
CDE04G3112 Ceratophyllum demersum HOM05D005329 ORTHO05D006858 5.1e-93 345.9 326 54.9
BraA09t40715Z Brassica rapa HOM05D005329 ORTHO05D006858 6.6e-93 345.5 369 52.8
A03p25050 Brassica napus HOM05D005329 ORTHO05D006858 8.7e-93 345.1 334 55.4
BolC8t51147H Brassica oleracea HOM05D005329 ORTHO05D006858 8.7e-93 345.1 322 56.2
BraA03t11707Z Brassica rapa HOM05D005329 ORTHO05D006858 8.7e-93 345.1 334 55.4
C03p29890 Brassica napus HOM05D005329 ORTHO05D006858 1.1e-92 344.7 333 55.0
BolC3t15336H Brassica oleracea HOM05D005329 ORTHO05D006858 1.1e-92 344.7 333 55.0
Aa31LG10G14910 Aethionema arabicum HOM05D005329 ORTHO05D006858 2.5e-92 343.6 383 49.3
ECA236G1715 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-90 338.2 316 58.9
CSS0025552 Camellia sinensis var. sinensis HOM05D005329 ORTHO05D006858 1.4e-90 337.8 268 64.2
Actinidia12186 Actinidia chinensis HOM05D005329 ORTHO05D006858 2.0e-89 334.0 311 57.6
Haze_02679 Corylus avellana HOM05D005329 ORTHO05D006858 1.7e-88 330.9 474 43.9
PGSC0003DMG400026014 Solanum tuberosum HOM05D005329 ORTHO05D006858 2.4e-87 327.0 366 51.1
FvH4_7g11110 Fragaria vesca HOM05D005329 ORTHO05D006858 4.2e-87 326.2 244 67.2
BcaC07g40582 Brassica carinata HOM05D005329 ORTHO05D006858 1.2e-86 324.7 366 51.4
Oeu005823.1 Olea europaea HOM05D005329 ORTHO05D006858 1.3e-85 321.2 344 51.2
Lj7A535G33 Lonicera japonica HOM05D005329 ORTHO05D006858 1.4e-82 311.2 337 52.8
DCAR_015887 Daucus carota HOM05D005329 ORTHO05D006858 3.8e-80 303.1 355 48.5
Aa31LG1G26700 Aethionema arabicum HOM05D005329 ORTHO05D006858 6.0e-78 295.8 331 49.8
Duzib138G0318 Durio zibethinus HOM05D005329 ORTHO05D006858 4.8e-75 286.2 236 59.7
HPP92_022438 Vanilla planifolia HOM05D005329 ORTHO05D006858 6.3e-75 285.8 297 51.2
Actinidia22816 Actinidia chinensis HOM05D005329 ORTHO05D006858 1.1e-71 275.0 272 52.9
Dinv43674 Davidia involucrata HOM05D005329 ORTHO05D006858 1.4e-71 274.6 280 53.2
Hund22462 Selenicereus undatus HOM05D005329 ORTHO05D006858 2.5e-71 273.9 375 47.2
MD02G1210300 Malus domestica HOM05D005329 ORTHO05D006858 2.3e-69 267.3 303 53.1
unitig_31.g34043 Utricularia gibba HOM05D005329 ORTHO05D006858 4.8e-67 259.6 320 46.9
Cre12.g489050 Chlamydomonas reinhardtii HOM05D005329 ORTHO05D006858 2.4e-66 257.3 302 47.0
Actinidia22760 Actinidia chinensis HOM05D005329 ORTHO05D006858 2.7e-62 243.8 206 59.2
PRCOL_00006057 Prasinoderma coloniale HOM05D005329 ORTHO05D006858 1.2e-49 201.8 290 42.8
MBI04_g41909_MAGBIO Magnolia biondii HOM05D005329 ORTHO05D006858 1.2e-46 191.8 191 55.0
MCO03G003 Micromonas commoda HOM05D005329 ORTHO05D006858 1.2e-46 191.8 362 34.8
AUR62044468 Chenopodium quinoa HOM05D005329 ORTHO05D006858 2.0e-44 184.5 180 53.3
MBI04_g41908_MAGBIO Magnolia biondii HOM05D005329 ORTHO05D006858 1.7e-43 181.4 148 60.8
CARHR171010 Cardamine hirsuta HOM05D005329 ORTHO05D006858 4.1e-42 176.8 238 45.0
Cpa.g.c30654 Carica papaya HOM05D005329 ORTHO05D006858 2.8e-35 154.1 134 59.7
ECA027G0001 Erigeron canadensis HOM05D000446 ORTHO05D000321 2.8e-27 127.5 179 49.2
Cpa.g.sc49.156 Carica papaya HOM05D005329 ORTHO05D006858 1.2e-25 122.1 130 52.3
A04p01540 Brassica napus HOM05D005329 ORTHO05D041517 8.3e-11 72.8 49 71.4
Actinidia31424 Actinidia chinensis HOM05D005329 ORTHO05D030836 6.6e-08 63.2 110 41.8
Thhalv10026913m.g Eutrema salsugineum HOM05D002455 ORTHO05D002816 1.2e-06 58.9 153 34.6
BraA04t15874Z Brassica rapa HOM05D005329 ORTHO05D041517 2.1e-06 58.2 43 65.1


User provided reference genes

Program Settings