Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.6e-189 664.1 384 100.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-120 437.6 384 70.8
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.5e-120 434.9 384 70.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.7e-64 250.8 351 52.7
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 6.9e-61 238.8 310 56.1
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 9.3e-58 228.4 290 58.3
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.6e-57 227.6 334 50.3
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 3.5e-57 226.5 325 52.6
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.0e-56 224.9 321 51.4
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.3e-56 224.6 326 52.5
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 3.9e-56 223.0 320 51.2
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 8.7e-56 221.9 358 48.0
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-55 221.5 303 53.1
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.1e-55 221.5 328 51.5
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 3.3e-55 219.9 325 50.5
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 3.3e-55 219.9 357 49.9
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 4.3e-55 219.5 308 52.3
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 4.3e-55 219.5 339 49.6
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 5.6e-55 219.2 322 50.3
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 9.6e-55 218.4 309 50.5
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.8e-54 216.9 295 52.5
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 2.8e-54 216.9 342 49.4
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 2.8e-54 216.9 308 52.6
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 4.8e-54 216.1 340 47.1
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 6.2e-54 215.7 307 45.9
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 6.2e-54 215.7 302 52.0
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 8.1e-54 215.3 302 52.3
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.1e-53 214.9 303 51.8
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.1e-53 214.9 309 51.5
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.1e-53 214.9 307 52.4
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.4e-53 214.5 310 50.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.8e-53 214.2 305 51.5
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.8e-53 214.2 332 48.8
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.4e-53 213.8 334 50.6
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.4e-53 213.8 298 53.0
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 3.1e-53 213.4 349 47.3
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 4.0e-53 213.0 306 51.6
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 5.3e-53 212.6 293 52.9
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.9e-53 212.2 300 52.3
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 6.9e-53 212.2 331 49.8
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 9.0e-53 211.8 370 44.3
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.2e-52 211.5 315 48.9
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.2e-52 211.5 303 50.2
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.2e-52 211.5 290 52.8
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.5e-52 211.1 300 52.3
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 2.0e-52 210.7 290 51.4
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 2.0e-52 210.7 290 50.7
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.0e-52 210.7 306 50.3
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.0e-52 210.7 306 50.3
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 2.0e-52 210.7 323 48.6
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 2.6e-52 210.3 301 50.5
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 2.6e-52 210.3 342 45.3
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.6e-52 210.3 298 49.7
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 3.4e-52 209.9 336 47.0
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 3.4e-52 209.9 310 50.6
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 4.5e-52 209.5 288 51.7
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 4.5e-52 209.5 288 51.7
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.8e-52 209.1 300 52.3
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.8e-52 209.1 305 51.1
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 5.8e-52 209.1 334 48.5
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.8e-52 209.1 311 49.5
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.8e-52 209.1 311 49.8
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 5.8e-52 209.1 301 50.8
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 9.9e-52 208.4 320 46.2
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 9.9e-52 208.4 315 49.5
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 1.3e-51 208.0 278 52.5
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.3e-51 208.0 305 51.1
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.3e-51 208.0 310 49.7
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.7e-51 207.6 300 51.7
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.7e-51 207.6 335 48.7
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-51 207.2 278 54.0
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 3.8e-51 206.5 366 45.6
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.9e-51 206.1 315 49.2
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 4.9e-51 206.1 318 49.1
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 4.9e-51 206.1 322 49.7
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 6.4e-51 205.7 294 52.4
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 6.4e-51 205.7 231 50.2
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 6.4e-51 205.7 315 48.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.1e-50 204.9 307 48.2
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.4e-50 204.5 309 48.9
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 1.4e-50 204.5 315 48.9
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.2e-50 203.4 314 48.4
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 4.2e-50 203.0 230 50.4
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 7.1e-50 202.2 308 50.3
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 9.3e-50 201.8 300 49.3
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.2e-49 201.4 319 48.9
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.2e-49 201.4 319 48.9
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.2e-49 201.4 235 49.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-49 201.1 295 52.2
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.6e-49 201.1 314 48.7
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.1e-49 200.7 341 46.3
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 2.7e-49 200.3 299 50.2
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.0e-48 198.4 307 48.5
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.3e-48 198.0 302 48.7
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.3e-48 198.0 293 50.9
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.8e-48 197.6 314 47.1
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.3e-48 197.2 325 50.8
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 3.0e-48 196.8 246 47.6
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 3.0e-48 196.8 300 48.7
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 7.4e-47 192.2 230 47.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 8.2e-46 188.7 310 48.4
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 9.0e-45 185.3 303 47.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.4e-42 177.9 282 47.2
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.0e-40 171.8 305 44.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.3e-39 166.4 308 45.1
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 5.7e-39 166.0 306 49.3
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.5e-34 150.6 224 44.2
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 9.3e-34 148.7 305 43.6
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.9e-32 143.3 257 45.5
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.7e-32 142.5 171 50.9
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 2.5e-31 140.6 115 62.6
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 3.3e-31 140.2 261 47.1
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.4e-29 134.8 308 41.6
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 1.0e-27 128.6 103 63.1
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.7e-19 101.3 156 37.8
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.8e-16 91.3 77 59.7
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.0e-16 90.5 90 54.4
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.1e-15 88.6 168 45.2
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 7.4e-15 85.9 146 52.1
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 6.3e-06 56.2 60 45.0


User provided reference genes

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