Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 3.7e-67 258.1 131 100.0
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 3.6e-46 188.3 130 69.2
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 4.7e-46 188.0 131 70.2
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 8.1e-46 187.2 131 67.2
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 1.1e-45 186.8 130 69.2
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 1.4e-45 186.4 131 67.9
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 1.4e-45 186.4 131 67.9
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 1.8e-45 186.0 131 68.7
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 2.4e-45 185.7 131 69.5
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 2.4e-45 185.7 131 68.7
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 4.0e-45 184.9 131 67.2
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 4.0e-45 184.9 131 68.7
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 5.2e-45 184.5 131 66.4
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 6.8e-45 184.1 131 71.0
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 6.8e-45 184.1 131 67.9
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 6.8e-45 184.1 131 68.7
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 8.9e-45 183.7 131 67.2
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 8.9e-45 183.7 131 66.4
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 8.9e-45 183.7 131 67.2
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 8.9e-45 183.7 131 66.4
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 1.2e-44 183.3 131 66.4
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.2e-44 183.3 130 67.7
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 1.2e-44 183.3 131 67.2
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 1.2e-44 183.3 131 68.7
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.5e-44 183.0 131 67.2
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.5e-44 183.0 131 67.2
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.5e-44 183.0 131 67.2
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.5e-44 183.0 131 67.2
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.0e-44 182.6 131 67.2
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 2.0e-44 182.6 131 67.2
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 2.0e-44 182.6 131 69.5
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.0e-44 182.6 131 68.7
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 2.6e-44 182.2 131 65.6
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 2.6e-44 182.2 131 65.6
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 2.6e-44 182.2 131 68.7
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 3.4e-44 181.8 124 71.0
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 3.4e-44 181.8 131 66.4
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 3.4e-44 181.8 131 68.7
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 3.4e-44 181.8 131 65.6
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 3.4e-44 181.8 131 67.2
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 4.4e-44 181.4 131 65.6
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 4.4e-44 181.4 131 64.9
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 4.4e-44 181.4 131 66.4
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 5.8e-44 181.0 131 63.4
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 5.8e-44 181.0 131 65.6
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 5.8e-44 181.0 131 65.6
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 5.8e-44 181.0 131 64.9
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 7.6e-44 180.6 129 65.1
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 7.6e-44 180.6 131 66.4
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 7.6e-44 180.6 131 66.4
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 7.6e-44 180.6 129 66.7
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 7.6e-44 180.6 131 66.4
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 7.6e-44 180.6 130 68.5
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 7.6e-44 180.6 130 68.5
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 7.6e-44 180.6 131 66.4
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 7.6e-44 180.6 131 66.4
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 7.6e-44 180.6 131 66.4
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 9.9e-44 180.3 131 65.6
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 9.9e-44 180.3 131 66.4
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 9.9e-44 180.3 126 69.8
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 9.9e-44 180.3 131 67.2
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 1.3e-43 179.9 131 65.6
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 1.3e-43 179.9 131 65.6
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 1.3e-43 179.9 131 65.6
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 1.3e-43 179.9 131 67.9
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 1.3e-43 179.9 131 67.9
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 1.7e-43 179.5 131 66.4
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 1.7e-43 179.5 131 66.4
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.7e-43 179.5 131 65.6
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 2.2e-43 179.1 131 66.4
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 2.2e-43 179.1 131 66.4
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 2.9e-43 178.7 131 64.9
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 2.9e-43 178.7 131 67.9
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 2.9e-43 178.7 131 65.6
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 2.9e-43 178.7 131 65.6
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 2.9e-43 178.7 131 65.6
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 3.8e-43 178.3 131 63.4
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 3.8e-43 178.3 131 65.6
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 3.8e-43 178.3 129 66.7
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 3.8e-43 178.3 131 64.1
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 3.8e-43 178.3 131 65.6
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 4.9e-43 177.9 131 64.9
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 6.4e-43 177.6 131 66.4
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 6.4e-43 177.6 126 69.8
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 1.1e-42 176.8 129 64.3
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 1.1e-42 176.8 131 63.4
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 1.4e-42 176.4 126 68.3
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 1.9e-42 176.0 129 65.1
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 1.9e-42 176.0 125 67.2
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 1.9e-42 176.0 120 71.7
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 1.9e-42 176.0 131 63.4
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 2.4e-42 175.6 129 64.3
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 3.2e-42 175.3 131 67.9
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 3.2e-42 175.3 131 64.9
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 5.4e-42 174.5 131 63.4
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 7.1e-42 174.1 131 64.1
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 7.1e-42 174.1 129 64.3
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 7.1e-42 174.1 129 63.6
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 1.2e-41 173.3 118 70.3
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 1.2e-41 173.3 129 63.6
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 1.6e-41 172.9 131 62.6
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 2.7e-41 172.2 128 65.6
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 3.5e-41 171.8 131 64.9
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 4.6e-41 171.4 126 65.1
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 4.6e-41 171.4 126 66.7
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 7.8e-41 170.6 131 61.8
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 2.3e-40 169.1 131 62.6
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 1.5e-39 166.4 121 70.2
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 1.9e-39 166.0 118 66.1
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 2.5e-39 165.6 122 64.8
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 5.6e-39 164.5 120 65.0
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 7.3e-39 164.1 118 67.8
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 9.6e-39 163.7 119 63.9
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 4.8e-38 161.4 107 71.0
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 1.1e-37 160.2 117 63.2
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 1.1e-37 160.2 116 64.7
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.8e-37 159.5 114 65.8
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 5.3e-37 157.9 107 69.2
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.2e-36 156.8 107 71.0
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 5.8e-36 154.5 108 68.5
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 9.9e-36 153.7 110 68.2
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 8.7e-32 140.6 99 66.7
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 2.5e-31 139.0 129 55.8
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 3.8e-27 125.2 91 64.8
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 4.9e-27 124.8 123 48.0
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.9e-10 69.7 106 40.6


User provided reference genes

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