Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.3e-136 487.6 242 100.0
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.6e-117 424.5 242 84.7
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 9.3e-80 300.8 216 65.3
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.1e-68 263.1 215 56.7
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 1.1e-67 260.8 211 57.3
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.1e-67 259.2 211 56.9
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 9.0e-67 257.7 210 56.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 9.0e-67 257.7 211 55.9
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.0e-67 257.7 211 55.9
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.0e-67 257.7 227 53.3
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 9.0e-67 257.7 211 58.3
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.2e-66 257.3 224 54.0
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.5e-66 256.9 220 55.5
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.5e-66 256.9 227 53.3
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.6e-66 256.1 224 55.8
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 3.4e-66 255.8 208 57.2
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.0e-65 254.2 219 54.3
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 1.0e-65 254.2 213 55.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.7e-65 253.4 216 56.5
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.9e-65 252.7 214 55.1
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 3.8e-65 252.3 212 54.7
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 3.8e-65 252.3 219 53.4
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 6.5e-65 251.5 213 55.9
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-64 250.4 216 54.2
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 5.5e-64 248.4 212 55.2
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 5.5e-64 248.4 212 53.8
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 9.3e-64 247.7 215 53.5
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.6e-63 246.9 210 55.7
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.6e-63 246.9 216 53.2
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.6e-63 246.9 210 57.6
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.6e-63 246.9 212 54.7
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.1e-63 246.5 219 53.0
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.1e-63 246.5 223 51.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.1e-63 246.5 217 53.5
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 2.7e-63 246.1 217 53.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 3.5e-63 245.7 211 55.0
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 4.6e-63 245.4 212 54.7
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 4.6e-63 245.4 211 55.0
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 4.6e-63 245.4 215 52.6
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 6.0e-63 245.0 219 53.0
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 6.0e-63 245.0 216 53.2
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.0e-62 244.2 213 54.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.0e-62 244.2 212 52.8
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.3e-62 243.8 216 53.2
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.8e-62 243.4 216 53.7
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.3e-62 243.0 212 54.2
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.3e-62 243.0 211 54.0
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 3.0e-62 242.7 216 53.2
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 5.1e-62 241.9 215 53.0
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 5.1e-62 241.9 211 53.6
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 6.7e-62 241.5 215 53.0
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 6.7e-62 241.5 218 53.2
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 8.7e-62 241.1 224 51.8
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 8.7e-62 241.1 224 51.8
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 8.7e-62 241.1 218 53.2
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 8.7e-62 241.1 215 53.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.1e-61 240.7 215 52.6
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.9e-61 240.0 216 52.8
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.9e-61 240.0 217 53.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 3.3e-61 239.2 211 54.5
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 4.3e-61 238.8 212 53.3
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 9.6e-61 237.7 217 52.1
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.6e-60 236.9 213 51.2
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.6e-60 236.9 212 51.9
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 6.2e-60 235.0 201 53.7
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 6.2e-60 235.0 224 50.0
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 8.2e-60 234.6 213 52.6
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.4e-59 233.0 217 50.2
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 9.0e-59 231.1 211 51.7
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-58 230.7 211 53.6
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-58 230.7 211 53.6
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.3e-57 227.3 212 51.9
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.3e-57 227.3 220 47.7
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.7e-57 226.9 212 51.4
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 2.2e-57 226.5 212 51.9
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 2.2e-57 226.5 212 51.9
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 2.2e-57 226.5 212 51.9
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 2.2e-57 226.5 212 51.9
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 2.2e-57 226.5 212 51.9
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.1e-56 224.2 213 51.2
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.1e-56 224.2 221 50.7
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 7.2e-56 221.5 222 50.0
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 6.1e-55 218.4 166 62.0
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.3e-54 217.2 191 54.5
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.8e-54 216.9 212 50.5
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.8e-54 216.9 223 48.9
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 1.8e-54 216.9 211 49.8
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.5e-53 213.8 224 46.9
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.9e-53 213.4 216 49.1
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.5e-53 213.0 213 48.4
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.3e-53 212.6 213 47.9
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 3.3e-53 212.6 218 47.7
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.3e-52 210.7 211 51.2
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.3e-52 210.7 221 48.4
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.6e-52 210.3 211 48.3
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 4.8e-52 208.8 211 48.3
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 6.3e-52 208.4 213 47.9
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.2e-52 208.0 216 48.1
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.8e-51 206.8 213 49.3
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.5e-50 203.8 224 47.8
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.4e-50 202.6 218 46.3
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.3e-49 200.7 220 47.3
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.3e-49 200.7 215 45.6
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.7e-49 200.3 215 46.5
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.2e-49 199.9 230 46.1
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.2e-49 199.9 230 46.1
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 5.0e-49 198.7 212 47.6
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 5.0e-49 198.7 212 47.2
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 8.5e-49 198.0 223 46.6
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.2e-48 195.7 224 46.4
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 9.4e-48 194.5 214 45.3
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 2.7e-47 193.0 226 45.1
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 7.9e-47 191.4 219 43.8
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 7.9e-47 191.4 219 43.8
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.0e-46 191.0 227 45.4
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.4e-46 190.7 212 47.2
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 1.4e-46 190.7 219 45.2
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 3.0e-46 189.5 212 46.7
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.1e-45 187.6 212 44.8
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.3e-44 184.1 170 49.4
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 5.9e-42 175.3 166 54.2
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.5e-40 169.9 175 47.4
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.2e-40 169.5 181 50.8
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.7e-39 166.4 180 46.7
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 4.7e-39 165.6 214 40.7
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 6.1e-39 165.2 211 44.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 7.7e-34 148.3 169 42.0
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.9e-33 146.4 212 39.2
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 1.2e-31 141.0 131 50.4
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 2.7e-31 139.8 128 49.2
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.6e-31 139.4 223 38.1
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 2.0e-29 133.7 137 44.5
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 5.3e-27 125.6 134 46.3
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.3e-25 120.9 220 33.2
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 8.5e-25 118.2 213 37.1
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.7e-21 105.5 95 53.7
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 7.5e-21 105.1 89 49.4
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 3.1e-19 99.8 92 47.8
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 4.0e-14 82.8 159 35.2
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 8.0e-07 58.5 136 28.7
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 1.0e-06 58.2 130 28.5
TAR628G0922 Trochodendron aralioides HOM05D003144 ORTHO05D003539 1.0e-06 58.2 135 28.1
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 3.0e-06 56.6 135 28.1
MCO09G464 Micromonas commoda HOM05D005542 ORTHO05D006708 3.0e-06 56.6 142 29.6
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 6.8e-06 55.5 135 28.9


User provided reference genes

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