Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.1e-235 819.7 445 100.0
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 3.9e-76 289.7 458 40.6
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 6.7e-76 288.9 453 42.4
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.2e-66 257.3 333 45.6
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 3.5e-64 250.0 328 43.6
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.0e-63 248.4 330 43.6
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.3e-63 248.1 359 42.6
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.3e-63 248.1 343 43.4
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.7e-63 247.7 330 42.7
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 2.9e-63 246.9 326 43.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 1.5e-62 244.6 323 41.8
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.5e-62 243.8 341 43.1
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 2.5e-62 243.8 325 44.3
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.5e-62 243.8 337 44.8
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.7e-61 240.4 327 43.7
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.7e-61 239.6 328 42.1
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 6.1e-61 239.2 325 42.2
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 8.0e-61 238.8 329 42.6
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 8.0e-61 238.8 329 41.9
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.0e-60 238.4 324 43.8
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.4e-60 238.0 328 41.2
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.4e-60 238.0 325 43.4
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 3.0e-60 236.9 328 42.4
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 3.0e-60 236.9 326 42.0
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 3.9e-60 236.5 331 42.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 3.9e-60 236.5 333 42.9
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 5.2e-60 236.1 332 41.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.5e-59 234.6 331 42.6
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 2.6e-59 233.8 316 42.1
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 4.4e-59 233.0 330 41.2
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.4e-59 233.0 323 42.1
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 4.4e-59 233.0 320 42.8
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 7.4e-59 232.3 322 39.8
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.4e-59 232.3 337 42.1
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 9.7e-59 231.9 326 42.6
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 9.7e-59 231.9 326 42.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.3e-58 231.5 294 44.6
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.7e-58 231.1 304 43.8
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 2.2e-58 230.7 338 41.4
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.2e-58 230.7 336 41.4
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-58 230.7 337 41.8
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-58 230.7 337 41.8
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.2e-58 230.7 329 40.1
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.8e-58 229.6 326 40.8
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 4.8e-58 229.6 329 42.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 8.2e-58 228.8 324 41.7
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 8.2e-58 228.8 346 40.8
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-57 228.4 336 40.8
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.1e-57 228.4 336 41.1
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.4e-57 228.0 337 41.5
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.8e-57 227.6 326 40.5
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.8e-57 227.6 346 40.8
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 2.4e-57 227.3 324 42.3
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 3.1e-57 226.9 406 38.9
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 3.1e-57 226.9 330 40.3
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 3.1e-57 226.9 323 41.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 3.1e-57 226.9 329 40.4
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 4.1e-57 226.5 327 39.8
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 7.0e-57 225.7 326 40.5
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 7.0e-57 225.7 326 40.8
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 7.0e-57 225.7 329 41.9
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 7.0e-57 225.7 328 42.7
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 7.0e-57 225.7 341 40.2
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 7.0e-57 225.7 320 41.6
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 9.1e-57 225.3 369 40.9
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.2e-56 224.9 326 40.5
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.2e-56 224.9 330 40.9
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.6e-56 224.6 323 39.3
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.6e-56 224.6 326 41.7
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 2.0e-56 224.2 323 39.3
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 2.6e-56 223.8 328 42.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.5e-56 223.4 324 40.7
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 3.5e-56 223.4 319 42.0
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 3.5e-56 223.4 329 40.4
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 4.5e-56 223.0 331 39.9
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 4.5e-56 223.0 327 38.2
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 4.5e-56 223.0 331 39.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.5e-56 223.0 326 41.7
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.0e-55 221.9 289 42.9
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.3e-55 221.5 317 41.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-55 220.7 326 41.7
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 2.9e-55 220.3 328 41.5
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 3.8e-55 219.9 317 41.0
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 3.8e-55 219.9 309 41.1
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 5.0e-55 219.5 326 41.7
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 8.5e-55 218.8 322 40.1
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.9e-54 217.6 289 42.2
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.9e-54 217.6 325 40.3
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 4.2e-54 216.5 337 41.2
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 5.5e-54 216.1 323 40.9
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 9.4e-54 215.3 351 39.0
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 9.4e-54 215.3 329 40.1
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.6e-53 214.5 320 40.9
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 2.7e-53 213.8 329 38.6
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 2.7e-53 213.8 303 40.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 3.6e-53 213.4 323 39.9
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 4.7e-53 213.0 331 39.9
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 6.1e-53 212.6 327 38.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.3e-52 210.7 378 36.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 8.8e-52 208.8 325 39.7
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 3.4e-51 206.8 349 37.0
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.3e-50 204.9 285 43.2
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.3e-50 204.9 371 36.9
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 1.4e-49 201.4 323 42.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.8e-49 201.1 325 38.5
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 9.1e-49 198.7 338 37.6
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.5e-48 196.8 297 38.0
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 4.2e-46 189.9 389 36.8
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 7.2e-46 189.1 290 40.0
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.4e-44 184.9 381 36.5
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-43 181.0 439 32.1
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.7e-42 176.8 308 34.7
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.1e-41 175.3 313 36.1
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 2.1e-37 161.0 380 32.4
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 2.3e-36 157.5 358 32.4
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 6.3e-34 149.4 289 35.6
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 5.4e-33 146.4 224 39.3
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 6.6e-31 139.4 206 37.4
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.4e-25 120.9 155 47.1
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 2.3e-23 114.4 340 29.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-22 112.1 206 33.0
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.9e-22 111.3 179 43.0
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.1e-21 107.8 294 31.3
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 5.2e-20 103.2 137 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 4.4e-19 100.1 78 70.5
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.6e-16 91.7 115 40.9
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.0e-15 89.0 216 34.3
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.0e-15 89.0 159 32.7
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 2.3e-15 87.8 171 31.0
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 3.9e-15 87.0 118 49.2
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 6.6e-15 86.3 150 35.3
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.3e-14 82.8 64 67.2
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 5.2e-12 76.6 169 30.8
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 5.2e-12 76.6 51 72.5
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 5.2e-12 76.6 56 69.6
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 9.9e-11 72.4 482 25.1
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-10 72.0 61 63.9
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.7e-10 71.6 56 64.3
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 2.1e-08 64.7 73 39.7
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-07 62.0 135 33.3
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 2.3e-07 61.2 217 27.2
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 2.3e-07 61.2 101 34.7
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 8.6e-07 59.3 165 26.7
SEGI_13080 Sequoiadendron giganteum HOM05D026866 ORTHO05D005197 1.5e-06 58.5 163 31.9
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 7.3e-06 56.2 132 31.8


User provided reference genes

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