Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 0.0e+00 1252.3 627 100.0
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 0.0e+00 1078.9 630 85.4
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 7.2e-225 784.3 649 63.6
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 7.0e-204 714.5 673 57.5
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 3.6e-184 649.0 633 56.1
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 3.0e-162 576.2 649 50.2
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 3.0e-162 576.2 649 50.2
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 3.0e-162 576.2 603 52.4
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 6.6e-162 575.1 632 51.1
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.5e-161 573.9 660 49.4
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.9e-161 573.5 643 48.8
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 2.5e-161 573.2 641 49.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.5e-161 573.2 651 49.5
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 5.6e-161 572.0 642 50.0
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.3e-161 571.6 641 50.4
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 7.3e-161 571.6 645 50.5
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.1e-160 570.1 647 50.4
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 2.1e-160 570.1 643 49.5
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.8e-160 569.7 654 49.5
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 3.6e-160 569.3 660 49.1
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 4.7e-160 568.9 657 48.6
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 6.2e-160 568.5 644 50.2
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 6.2e-160 568.5 647 48.5
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.8e-159 567.0 647 49.5
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.8e-159 567.0 632 50.0
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.1e-159 566.2 643 48.8
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.1e-159 566.2 648 48.5
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.0e-159 565.8 641 49.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 5.2e-159 565.5 647 49.9
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 8.9e-159 564.7 647 49.5
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 1.2e-158 564.3 638 50.2
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.6e-158 563.1 649 48.7
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.6e-158 563.1 644 49.7
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 3.4e-158 562.8 651 48.8
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 3.4e-158 562.8 639 48.8
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 5.8e-158 562.0 650 48.3
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 5.8e-158 562.0 638 49.2
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.8e-158 562.0 648 48.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 7.6e-158 561.6 647 48.5
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 9.9e-158 561.2 650 48.5
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 9.9e-158 561.2 641 48.8
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 2.2e-157 560.1 645 49.0
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.2e-157 560.1 644 48.8
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.9e-157 559.7 642 49.2
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 4.9e-157 558.9 643 48.7
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.9e-157 558.9 644 48.3
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 6.4e-157 558.5 646 46.9
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 8.4e-157 558.1 643 48.8
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.1e-156 557.8 650 47.2
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.1e-156 557.8 645 47.8
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.4e-156 557.4 640 49.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.4e-156 557.4 645 49.8
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.9e-156 557.0 658 47.6
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.9e-156 557.0 653 48.1
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.2e-156 556.2 639 49.5
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 4.1e-156 555.8 644 48.4
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.2e-155 554.3 658 47.6
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.2e-155 554.3 648 47.4
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.6e-155 553.9 637 49.0
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.7e-155 553.1 651 48.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.5e-155 552.7 644 47.2
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 4.6e-155 552.4 638 48.7
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.0e-154 551.2 651 49.5
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 3.0e-154 549.7 536 52.6
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 3.9e-154 549.3 652 48.2
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 6.6e-154 548.5 647 48.1
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.1e-153 547.7 638 47.2
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 2.5e-153 546.6 643 48.7
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 5.6e-153 545.4 643 48.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 7.3e-153 545.0 645 47.0
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 7.3e-153 545.0 648 48.0
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 9.6e-153 544.7 653 47.8
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.6e-152 543.9 649 48.5
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 4.7e-152 542.3 651 47.8
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 4.7e-152 542.3 645 48.8
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 6.2e-152 542.0 644 47.2
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 8.1e-152 541.6 643 49.0
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.4e-151 540.8 640 47.5
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.4e-151 540.0 652 46.6
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 2.4e-151 540.0 649 47.6
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 3.1e-151 539.7 642 48.0
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 3.1e-151 539.7 642 48.0
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 3.1e-151 539.7 638 47.3
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 4.0e-151 539.3 649 48.2
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 4.0e-151 539.3 644 48.6
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 5.2e-151 538.9 633 47.7
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 6.8e-151 538.5 656 47.1
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 8.9e-151 538.1 649 48.2
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 2.6e-150 536.6 625 49.0
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.6e-150 536.6 636 47.6
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.4e-150 536.2 637 47.6
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.8e-150 535.4 637 48.0
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.7e-149 533.9 512 53.7
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.7e-149 533.9 512 53.7
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.9e-149 533.1 650 47.5
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.9e-149 533.1 641 45.7
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.9e-149 533.1 638 47.0
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 8.4e-149 531.6 652 48.2
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 9.3e-148 528.1 516 51.9
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.1e-147 526.9 648 48.1
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.7e-147 526.6 645 46.2
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.7e-146 523.9 644 47.4
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 2.3e-146 523.5 641 45.4
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 7.3e-145 518.5 771 41.9
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.1e-143 514.6 647 45.7
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 2.4e-143 513.5 646 46.1
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 3.1e-143 513.1 548 49.8
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.3e-141 507.7 487 54.0
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 4.2e-140 502.7 641 43.8
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.6e-139 500.7 516 50.0
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.0e-139 498.8 630 45.6
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.1e-135 486.5 637 45.1
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 3.4e-134 483.0 558 48.2
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 3.2e-132 476.5 549 47.9
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 4.3e-129 466.1 509 49.3
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 4.8e-128 462.6 652 42.6
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 8.1e-128 461.8 456 53.5
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 2.4e-127 460.3 515 48.5
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.3e-125 454.5 461 51.4
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 3.8e-125 453.0 455 51.4
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 6.5e-125 452.2 686 40.8
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.0e-122 444.9 641 41.3
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 5.1e-122 442.6 639 42.7
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.9e-118 429.1 398 54.0
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 5.0e-117 426.0 437 51.5
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 3.4e-110 403.3 364 55.2
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 4.2e-108 396.4 319 60.5
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 5.3e-103 379.4 309 59.9
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.0e-102 377.5 305 59.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 7.9e-99 365.5 308 58.1
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 3.7e-96 356.7 294 57.1
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 6.1e-83 312.8 313 55.0
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 2.0e-78 297.7 254 56.3
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 2.0e-78 297.7 254 56.3
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.8e-59 234.2 426 37.3
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.7e-51 206.8 239 52.7
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.0e-33 148.3 294 36.1
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 6.2e-27 126.7 219 40.6
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 9.9e-25 119.4 177 41.2
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 2.9e-24 117.9 188 43.6
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.9e-24 117.9 299 30.4
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 2.4e-23 114.8 163 46.0
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 3.2e-23 114.4 245 33.9
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.9e-17 92.8 87 51.7
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.1e-15 86.7 179 36.3
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 3.7e-11 74.3 99 40.4
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.4e-09 67.8 164 35.4
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 6.0e-06 57.0 123 35.0


User provided reference genes

Program Settings